Sequence
atgc intronic sequence ATGC exonic sequence...ttgctgataaaaaaaagagataaaaagaaagcacctgtaatatcttgcaaaaataccaattttaagaaaatttatctgttctttcttttttcacctgcagCATTAAGGAATTTAGTGAATGGGCTCAGTGTCTTGTGCTGGAATTGGTGTCCAAGTACATTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTC
Basic information
species | Glycine max |
transcript | GLYMA06G08590.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G08590.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G029077_T01 (Zea mays), 3'ss of exon 3
ttgctgataaaaaaaagagataaaaagaaagcacctgtaatatcttgcaaaaataccaattttaagaaaatttatct-gttctttcttttttcacctgcagCATTAAGGAATTTAGTGAATGGGCTCAGTGTCTTGTGCTGGAATTGGTGTCCAAGTACATTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTC
| || || || | || || || ||| || |||| ||| | | ||| |||| || ||||| || || || || ||||||||||| |||||| |||| || || |||| || |||| | ||||||| ||||| | ||||||||||| |||||||||||
---------------gtgagttttaacctggc-tttggagcattttctgttaaa--taatcccaatgtgatttttcttgagttctctatttttacgtgcagGATCAAAGAGTTCAGTGAATGGGCACAGTGTATTGTTCTTGAGTTGGCATCAAAGTTCCTTCCATCTGATAATAACGAAATATTTGACATAATGAATCTG
upper sequence: GLYMA06G08590.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0008g03880.t01 (Vitis vinifera), 3'ss of exon 3
-ttgctgataaaaaaaagagataaaaagaaagcacctgtaatatcttgcaaaa-ataccaattttaagaa--aatttatctgttctttcttttttcacctgcagCATTAAGGAATTTAGTGAATGGGCTCAGTGTCTTGTGCTGGAATTGGTGTCCAAGTACATTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTC
| | | | || || || ||| || || |||| | | | | | | ||||||| || | || || | | || || || |||||||| ||||||||||| |||||||| || || || ||||| | || || | || ||||||||||||||||||||||| || |||||||||
gtatgttctttctcataggcattggaataaatcattatccatgccttggacactacatctttattaagaatggatgctttgctttgttgcatgtctttgtgtagGATCAAGGAATTCAGTGAATGGGCACAGTGTCTCGTACTTGAGTTGGTCGCTAATTATGTACCTTCAGATAACAGTGAAATATTTGACATTATGAATCTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgcaaaaataccaattttaagaaaatttatctgttctttcttttttcacctgcagCATTAAGGAATTTAGTGAATGGGCTCAGTGTCTTGTGCTGGAATTGGTGTCCAAGTACATTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTC
tttatctgttctttct CT-rich tract
aattttaagaaaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttgctgataaaaaaaagagataaaaagaaagcacctgtaatatcttgcaaaaataccaattttaagaaaatttatctgttctttcttttttcacctgcagCATTAAGGAATTTAGTGAATGGGCTCAGTGTCTTGTGCTGGAATTGGTGTCCAAGTACATTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTC
-tgctgat
- - - ataaaaa
- - - - aaaaaaa
- - - - - - - - - - - - - - - -cacctgt
- - - - - - - - - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa