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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtaaaggttgttctctatatatggtataaagtttgattttctttaccactcatttctattctgatggtgtatttctttatttatctatttgtattgacagACTACAACAAAGAAGAAAATTACTTCTGCATTTTCATTTCCTGCTGAACTTGATATGCGGCATAGAATGTCTGAGTTGTCTCAGTTCAACTTGGTATATG

Basic information

species Glycine max
transcript GLYMA06G07920.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G07920.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0008g03170.t01 (Vitis vinifera), 3'ss of exon 3
----gtaaaggttgttctctatatatggtataaagtt-tgattttctttaccactcatttctattctgatggtgtatttctttatttatctatttgtattgacagACTACAACAAAGAAGAAAATTACTTCTGCATTTTCATTTCCTGCTGAACTTGATATGCGGCATAGAATGTCTGAGTTGTCTCAGTTCAACTTGGTATATG
    | | | || ||| | |   |||  | |   |||     || |||| |   |  |||||||    |||   ||  | | | ||| | || || | |  | |||||||||||||||||||||| ||||||||||| |  |||||||  ||| | |||||| |  | ||  | |||||    ||| | ||  |  |  ||||||
tattgcagaagtagttgtgtg-gtatccttttttgttacaggttccttttcagtttttttctat----atgcattaactttctgtttgtttacttctttctatagACTACAACAAAGAAGAAAATCACTTCTGCATTCTGTTTTCCTGGAGAATTGGATATGAGAGAGAGGCTATCTGAACCTTCTGATTTGGAACTAATATATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccactcatttctattctgatggtgtatttctttatttatctatttgtattgacagACTACAACAAAGAAGAAAATTACTTCTGCATTTTCATTTCCTGCTGAACTTGATATGCGGCATAGAATGTCTGAGTTGTCTCAGTTCAACTTGGTATATG
             ttctgat  putative branch site (score: 3)
                      tgtatttctttattta  TA-rich tract