Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtttttttaacagatggaaccttgagcacagTGGAAACATTGGCATCTACTGCTATATGTGGAGTTGTTCACTCAATATTAGGTGGCCAACCTTTGTTGATTTTAGGAGTTGCTGAACCCACTGTCATAAT

Basic information

species Glycine max
transcript GLYMA06G07480.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G07480.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0008g04980.t01 (Vitis vinifera), 3'ss of exon 2
-------------------------------------------------------------------------------------gtgtttttttaacagatggaaccttgagcacagTGGAAACATTGGCATCTACTGCTATATGTGGAGTTGTTCACTCAATATTAGGTGGCCAACCTTTGTTGATTTTAGGAGTTGCTGAACCCACTGTCATAAT
                                                                                      | | |||||   ||||||   ||||||| ||||  ||||  | || |||||||||||||||||| |  | |||||||| || ||||| || |||||||||||||||||||||||                  
gcaagcgccaaatcataaatctatggatgagaacttttcaccatcttcttttcccatgggtatgattgtttttcatgattgaaacttttgtttttgttagATGGGCACTTGAGCTCAGTTCAAACTCTAGCTTCTACTGCTATATGTGGAATCATCCACTCAATTTTCGGTGGGCAGCCTTTGTTGATTTTAGGAGTTGC------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtttttttaacagatggaaccttgagcacagTGGAAACATTGGCATCTACTGCTATATGTGGAGTTGTTCACTCAATATTAGGTGGCCAACCTTTGTTGATTTTAGGAGTTGCTGAACCCACTGTCATAAT
                            ttttaac  putative branch site (score: 2)
                                               tttttttaacagat  TA-rich tract