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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaacactattcttaactagttttttttttttggtgtattctttagcgtttagaaggatctcgttttcattgtttttttttttttggcagCAATCTTTCGGGGTTGAATCTTGAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTAT

Basic information

species Glycine max
transcript GLYMA06G05900.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G05900.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 2
----------------------------------------------------------------gtgagtaacactattcttaactagttttttttttttggtgtattctttagcgtttagaag------gatctc---gttttcattgtttttttttttttggca---------gCAATCTTTCGGGGTTGAATCTTGAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTAT
                                                                   | |  || |    ||    |||||| |  |    || | |  || |    ||  |||      ||| |    ||||| ||| ||| |||||| || |||         | ||||| || |||||||||||||| || ||||| ||||||||||||||    || ||  |  |  ||||| |
gtaagccatgtcctcctgctctcttttcttttcttttctttttttgtctttcttgtttgtattttaaaatgccatttaattttgtaagttttgtaatccatgtatgtgattaaattcttgtaagtttattgatattcaggttttgattttttattttttatttgcaaacattttagTAATCTCTCAGGGTTGAATCTTGATGGGGAAATCTCACCTGCAATAGGAGATCTCAAGGGGCTACTCTCTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208198399|gb|GD997590.1|GD997590
EST:     GTTTGGAGAGGTGTTACGTGTGATAATGTCACTTTCAACGTGGTTGCACT                         CAATCTTTCGGGGTTGAATCTTGAGGGCGAAATTTCACCTGCAATAGGGAG
genomic: GTTTGGAGAGGTGTTACGTGTGATAATGTCACTTTCAACGTGGTTGCACTgtgagtaaca ... tttttggcagCAATCTTTCGGGGTTGAATCTTGAGGGCGAAATTTCACCTGCAATAGGGAG
EST: gi|208229472|gb|GE022876.1|GE022876
EST:     GTTTGGAGAGGTGTTACGTGTGATAATGTCACTTTCAACGTGGTTGCACT                         CAATCTTTCGGGGTTGAATCTTGAGGGCGAAATTTCACCTGCAATAGGGAG
genomic: GTTTGGAGAGGTGTTACGTGTGATAATGTCACTTTCAACGTGGTTGCACTgtgagtaaca ... tttttggcagCAATCTTTCGGGGTTGAATCTTGAGGGCGAAATTTCACCTGCAATAGGGAG
EST: gi|213594518|gb|DB973675.1|DB973675
EST:     GTTTGGAGAGGTGTTACGTGTGATAATGTCACTTTCAACGTGGGTGCACT                         CAATCTTTCGGGGTTGAATCTTGAGGGCGAAATTT
genomic: GTTTGGAGAGGTGTTACGTGTGATAATGTCACTTTCAACGTGGTTGCACTgtgagtaaca ... tttttggcagCAATCTTTCGGGGTTGAATCTTGAGGGCGAAATTT
EST: gi|208332397|gb|GE128662.1|GE128662
EST:     GTTTGGAGAGGTGTTACGTGTGATAATGTCACTTTCAACGTGGTTGCACT                         CAATCTTTCGGGGTTGAATCTTGAGGGCGAAATTTCACCTGCAATAGGGAG
genomic: GTTTGGAGAGGTGTTACGTGTGATAATGTCACTTTCAACGTGGTTGCACTgtgagtaaca ... tttttggcagCAATCTTTCGGGGTTGAATCTTGAGGGCGAAATTTCACCTGCAATAGGGAG
EST: gi|193661296|gb|FK607472.1|FK607472
EST:     GGAGAGGGGTTACGTGTGATAATGTCACTTTCAACGTGGTTGCACT                         CAATCTTTCGGGGTTGAATCTTGAGGGCGAAATTTCACCTGCAATAGGGAG
genomic: GGAGAGGTGTTACGTGTGATAATGTCACTTTCAACGTGGTTGCACTgtgagtaaca ... tttttggcagCAATCTTTCGGGGTTGAATCTTGAGGGCGAAATTTCACCTGCAATAGGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattctttagcgtttagaaggatctcgttttcattgtttttttttttttggcagCAATCTTTCGGGGTTGAATCTTGAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTAT
                       tctcgttttcattgtt  CT-rich tract
                            ttttcattgttttttt  TA-rich tract