1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagtgagcgtatatacattattattgtcttgttcaactttctgttaagaattatacgggcttagtttgcaagcctctgtgttttcctgcagTTGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACTGAGGAAAATATGCGCAAAAAACATGACCTTGACGAGAAGCTTGGCAATGATAAGAAT
species | Glycine max |
transcript | GLYMA06G04620.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCATTATCTTGGTTGGAAGAAGAG TTGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACTGAGGAAAAEST: gi|151394530|gb|EV264401.1|EV264401
genomic: TTCATTATCTTGGTTGGAAGAAGAGgtgagtgagc ... tttcctgcagTTGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACTGAGGAAAA
EST: TTCATTATCTTGGTTGGAAGAAGAG TTGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACTGAGGAAAAEST: gi|298185634|gb|HO030847.1|HO030847
genomic: TTCATTATCTTGGTTGGAAGAAGAGgtgagtgagc ... tttcctgcagTTGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACTGAGGAAAA
EST: TTCATTACCTTGGTTGGAAGAAGAG TTGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACTGAGGAAAAEST: gi|192295596|gb|FG988170.1|FG988170
genomic: TTCATTATCTTGGTTGGAAGAAGAGgtgagtgagc ... tttcctgcagTTGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACTGAGGAAAA
EST: CATTATCTTGGTTGGAAGAAGAG TTGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACTGAGGAAAA
genomic: CATTATCTTGGTTGGAAGAAGAGgtgagtgagc ... tttcctgcagTTGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACTGAGGAAAA
ctttctgttaagaattatacgggcttagtttgcaagcctctgtgttttcctgcagTTGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACTGAGGAAAATATGCGCAAAAAACATGACCTTGACGAGAAGCTTGGCAATGATAAGAAT
cctctgtgttttcct CT-rich tract
tgttaagaattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgagcgtatatacattattattgtcttgttcaactttctgttaagaattatacgggcttagtttgcaagcctctgtgttttcctgcagTTGGGATGAATGGCTTGACCTGGATCGTTTGATGAAACACACTGAGGAAAATATGCGCAAAAAACATGACCTTGACGAGAAGCTTGGCAATGATAAGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC