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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtcatcagttcgttactgcttgcagcatggttttcatagtttagttgtgctttagtatatgaagctaatatatttttatgcgcaaaaatatttagattaagtatttgaccataatatttaattgtgaaaagATTCTAAAAGAAGAAGTAAGAGACTTGCTGGATACCTCCTCCATGAGTAAACCAGAAACTGCAAACGGACATGCAGGAAAAATGACCTCTCCTGGGAAGC

Basic information

species Glycine max
transcript GLYMA06G04520.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G04520.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g10090.t01 (Vitis vinifera), 3'ss of exon 3
gtgtgtcatcagttcgttactgcttgcagcatggttttcatagtttagttgtgctttagtatatgaagctaatatatttttatgcgcaaaaatatt--tagattaagtatttgaccataatatttaattgtgaaaagATTCTAAAAGAAGAAGTAAGAGACTTGCTGGATACCTCCTCCATGAGTAAACCAGAAACTGCAAACGGACATGCAGGAAAAATGACCTCTCCTGGGAAGC
                                   ||| |||   || ||| | ||  |  |||     | ||||  |||  |       | |  |  || |  ||| ||||||| |||| |||    ||||||  |||| |||||||||||||| |||||||||||||| ||   ||  |||  ||| |||| |||||||| || ||  |||||||| |  |    || ||||| |
--------------------------------taatttgata--ctaattgagtttctgc-tatttgtttgatatcctttactttcttccattcctactataacaagcatttgacaataagattggcatgtgaa--gATTTTAAAAGAAGAAGTACGAGACTTGCTGGATCCCAGTTCTGTGAACAAATCAGAGACTGCAAATGGGCACACAGGAAAAGTACCTGTCCCCGGGAAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgcgcaaaaatatttagattaagtatttgaccataatatttaattgtgaaaagATTCTAAAAGAAGAAGTAAGAGACTTGCTGGATACCTCCTCCATGAGTAAACCAGAAACTGCAAACGGACATGCAGGAAAAATGACCTCTCCTGGGAAGC
                                       atttaat  putative branch site (score: 4)
       aaaaatatttagatta  TA-rich tract