1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttgtggctgttgaccttattttaaagccttgctgttatctgctttgcatttttaacttttttctagttactcacatgcattcctgttttctttgcgtcagAGAGACTGGAGCCTCGTGTGCATTGAAAGAGGTGGATCTGTTCCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTTGAGCAG
species | Glycine max |
transcript | GLYMA06G03970.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATCTGTTTATCATGCAACCAACTT AGAGACTGGAGCCTCGTGTGCATTGAAAGAGGTGGATCTGTTCCCTGATGAEST: gi|37996722|gb|CF808311.1|CF808311
genomic: GATCTGTTTATCATGCAACCAACTTgtatgcactt ... tttgcgtcagAGAGACTGGAGCCTCGTGTGCATTGAAAGAGGTGGATCTGTTCCCTGATGA
EST: AAACTTATAGGGCGTGGATCATTTGGATCTGTTTATCATGCAACCAACTT AGAGACTGGAGCCTCGTGTGCATTGAAAGAGGTGGATCTGTTCCCTGATGAEST: gi|37996920|gb|CF808509.1|CF808509
genomic: AAACTTATAGGGCGTGGATCATTTGGATCTGTTTATCATGCAACCAACTTgtatgcactt ... tttgcgtcagAGAGACTGGAGCCTCGTGTGCATTGAAAGAGGTGGATCTGTTCCCTGATGA
EST: AAACTTATAGGGCGCGGATCATATGGATCTGTTTATCATGCAACCAACTT AGAGACTGGAGCCTCGTGTGCAATGAAAGAGGTGGATCTGTTCCCTGATGAEST: gi|8284069|gb|BE021628.1|BE021628
genomic: AAACTTATAGGGCGTGGATCATTTGGATCTGTTTATCATGCAACCAACTTgtatgcactt ... tttgcgtcagAGAGACTGGAGCCTCGTGTGCATTGAAAGAGGTGGATCTGTTCCCTGATGA
EST: AAACTTATAGGGCGTGGATCATTTGGATCTGTTTATCATGCAACCAACTT AGAGACTGGAGCCTCGTGTGCATTGAAAGATGTGGATCTGTTCCCTGATGA
genomic: AAACTTATAGGGCGTGGATCATTTGGATCTGTTTATCATGCAACCAACTTgtatgcactt ... tttgcgtcagAGAGACTGGAGCCTCGTGTGCATTGAAAGAGGTGGATCTGTTCCCTGATGA
gcatttttaacttttttctagttactcacatgcattcctgttttctttgcgtcagAGAGACTGGAGCCTCGTGTGCATTGAAAGAGGTGGATCTGTTCCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTTGAGCAG
tactcac putative branch site (score: 1)
cattcctgttttcttt putative PPT
tttaacttttttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtggctgttgaccttattttaaagccttgctgttatctgctttgcatttttaacttttttctagttactcacatgcattcctgttttctttgcgtcagAGAGACTGGAGCCTCGTGTGCATTGAAAGAGGTGGATCTGTTCCCTGATGATCCTAAATCTGCTGACTGCATAAAGCAACTTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
ttgtggc
- - - -tgttgac
- - - - - - - - - - - - - ccttgct
- - - - - - - - - - - - - - - - - - - - -ctttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcattcc