Sequence
atgc intronic sequence ATGC exonic sequencegtgatccatcttatacattaatatatgtttaatttgataatctgaacattgatttttttctttctttcggaatttggggttcatgtatattacactgtggtttctactctatagGATTTTGAATTCAAGGAGTTGAATGAAGTCCTGAAGTACTACCCGCATGGTTATCATGGTGTAGATAGGGAAGGAAGACCTGTTTATATTGAGAGGCTAG
Basic information
species | Glycine max |
transcript | GLYMA06G03300.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G03300.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G19650.2 (Arabidopsis thaliana), 3'ss of exon 2
gtgatccatcttatacattaatatatgtttaatttgataatctgaacattgatttttttctttctttcggaatttggggttcatgtatattacactgtggtttctactctatagGATTTTGAATTCAAGGAGTTGAATGAAGTCCTGAAGTACTACCCGCATGGTTATCATGGTGTAGATAGGGAAGGAAGACCTGTTTATATTGAGAGGCTAG
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----------------gtatacagttagttactttcgtgtgttgtgcaa-aatattatttgttacaacggccttagagagt------tgctg-actgagttcttcactcca--gGACTTTGAGTTTCCTGAGTTGGATGAGGTTCTCAGGTACTACCCTCAGGGATATCATGGTGTTGATAAGGAAGGAAGACCTGTTTACATCGAAAGATTAG
upper sequence: GLYMA06G03300.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G75370.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgatccatcttatacattaatatatgtttaatttgataatctgaacattgatttttttctttctttcggaatttggggttcatgtatattacactgtggtttctactctatagGATTTTGAATTCAAGGAGTTGAATGAAGTCCTGAAGTACTACCCGCATGGTTATCATGGTGTAGATAGGGAAGGAAGACCTGTTTATATTGAGAGGCTAG
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------------gtgaatta-catgtttttaaa--aaaaatcttaatat--gttacttttaatctcatgtgat---ggtttta-----atctcaatatgtgtgtta----atagGATTTTGAATTTGAAGAGTTTGATGAAGTTCTGAAATACTACCCTCATGGTTATCATGGTGTTGATAAAGAAGGAAGGCCTGTTTACATTGAAAGATTAG
upper sequence: GLYMA06G03300.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv18s0001g12950.t01 (Vitis vinifera), 3'ss of exon 3
gtgatccatcttatacattaatatatgttta-atttgataatctgaa-cattgatttttttctt-tctttcggaatttggggttcatgtatattac----actgtggtttctactctat---agGATTTTGAATTCAAGGAGTTGAATGAAGTCCTGAAGTACTACCCGCATGGTTATCATGGTGTAGATAGGGAAGGAAGACCTGTTTATATTGAGAGGCTAG
|||| | | | | ||| ||| ||| || |||||| || || | || || | | || || | |||| | | ||| | || | |||| | | | |||||||||| ||||| |||||||| ||||| || |||||||| || || |||||||| ||||| |||| ||| || ||||| ||||||||||| || || |
----gtaatctcaaatttcatcccatgattagattctattttctgaagcaatgttccattactggtttctcagatctattggtttgttaacattgttctaattgagatttcatgtttctcccagGATTTTGAGTTCAAAGAGTTGAACGAAGTACTCAAGTACTATCCTCAGGGTTATCACGGTGTGGATAAGGAGGGGAGACCCGTTTATATTGAAAGACTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttctttcggaatttggggttcatgtatattacactgtggtttctactctatagGATTTTGAATTCAAGGAGTTGAATGAAGTCCTGAAGTACTACCCGCATGGTTATCATGGTGTAGATAGGGAAGGAAGACCTGTTTATATTGAGAGGCTAG
tttctactct CT-rich tract
atgtatatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgatccatcttatacattaatatatgtttaatttgataatctgaacattgatttttttctttctttcggaatttggggttcatgtatattacactgtggtttctactctatagGATTTTGAATTCAAGGAGTTGAATGAAGTCCTGAAGTACTACCCGCATGGTTATCATGGTGTAGATAGGGAAGGAAGACCTGTTTATATTGAGAGGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG