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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttattatttaattatcccttaatgtttcttgctttctgtctatgataaataattgattatttggttcccttgattcaattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCCAAG

Basic information

species Glycine max
transcript GLYMA06G03070.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G03070.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G75510.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatgtttattatttaattatcc-----cttaatgtttcttgctttctgtcta-tgataaataattg--attatttggttcccttga-ttcaattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCCAAG
|| |||||  |||||    || |      ||  | |   ||||||    | || ||     ||| ||  |  | ||   | |||||| ||       |||||||| |||||||| || |||||||  |||||||| |||||||||||| ||||| ||||||| ||||||||||||
gtctgttttatattttcacattcaggtgtttgttttcctttgcttctcctatactggctcttaagtgtaaggacttttcttccttgaatttgcgctaaagGTTATTGATAATGACCGCGGAGTTCATATGAGGCCCATGCCTGGAATGCTTGGTTTAGTTTCCTCCAATTCCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19935508|gb|BQ080469.1|BQ080469
EST:     TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatgtttat ... caattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|58023918|gb|CX710659.1|CX710659
EST:     TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatgtttat ... caattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|19935238|gb|BQ080268.1|BQ080268
EST:     TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatgtttat ... caattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|192294408|gb|FG987337.1|FG987337
EST:     TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatgtttat ... caattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|298182572|gb|HO031307.1|HO031307
EST:     TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GATATCGATAATGATCGGGGAGTTCTAATGAGGCCTATGCCTGGAATGATT
genomic: TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatgtttat ... caattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|208272326|gb|GE065832.1|GE065832
EST:     TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatgtttat ... caattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|19348661|gb|BM893193.1|BM893193
EST:     TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatgtttat ... caattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|151398032|gb|EV267910.1|EV267910
EST:     TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatgtttat ... caattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|298193573|gb|HO040221.1|HO040221
EST:     TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatgtttat ... caattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|213601504|gb|DB970420.1|DB970420
EST:     TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatgtttat ... caattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|209722481|gb|BW668756.1|BW668756
EST:     TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatgtttat ... caattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|23735091|gb|BU765812.1|BU765812
EST:     TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatgtttat ... caattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|58024109|gb|CX710850.1|CX710850
EST:     TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatgtttat ... caattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|298191952|gb|HO036034.1|HO036034
EST:     TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATCGATAATGATCGGGG
genomic: TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatgtttat ... caattggaagGTTATCGATAATGATCGGGG
EST: gi|7147539|gb|AW509461.1|AW509461
EST:     TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatgtttat ... caattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|19345950|gb|BM890830.1|BM890830
EST:     TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatgtttat ... caattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|192300028|gb|FG991846.1|FG991846
EST:     TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatgtttat ... caattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|209702688|gb|BW675663.1|BW675663
EST:     TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
genomic: TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatgtttat ... caattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATT
EST: gi|9564300|gb|BE473809.1|BE473809
EST:     TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAG                         GTTATCGATAATGATCGGNGAGTTCTAATGAAGCCA
genomic: TGTGCCGAGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGgtatgtttat ... caattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttctgtctatgataaataattgattatttggttcccttgattcaattggaagGTTATCGATAATGATCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCCAAG
        tctatgataaataatt  TA-rich tract