Sequence
atgc intronic sequence ATGC exonic sequencegtatttccgtgcaaaaataggaaaatcactcttcatggtgtgatcttttttgtgtataacttttttatctatatatctaactataaattttttatcctcaagGATTTTGAATTCAATGAACTAGAGGAAGTTCTAAAATACTACCCACAAGGGCATCATGGGATTGACAAGGATGGCCGACCTGTTTACATTGAAAAGTTGG
Basic information
species | Glycine max |
transcript | GLYMA06G01270.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G01270.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G36490.1 (Arabidopsis thaliana), 3'ss of exon 2
gtatttccgtgcaaaaataggaaaatcactcttcatggtgtgatcttttttgtgtataacttttttatctatatatctaactataaattttttatcctcaagGATTTTGAATTCAATGAACTAGAGGAAGTTCTAAAATACTACCCACAAGGGCATCATGGGATTGACAAGGATGGCCGACCTGTTTACATTGAAAAGTTGG
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gtatgattattattctagaggaacgtt-ttgcagatttgaaaatggtctctttgagtagtactaacattctcttctttggtt-----ttgtatatttttaagGAGTTTGATTTCAAGGAAATTGATGAAGTGTTGAAATACTACCCTCAAGGACACCATGGAGTTGACAAGGAAGGACGACCTGTGTACATTGAGAGGCTTG
upper sequence: GLYMA06G01270.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0038g04480.t01 (Vitis vinifera), 3'ss of exon 3
gtatttccgtgcaaaaataggaa----aatcactcttcatggtgtg-------atcttttttgtgtataacttttttatctatatatc---------taactataaattttttatcctcaagGATTTTGAATTCAATGAACTAGAGGAAGTTCTAAAATACTACCCACAAGGGCATCATGGGATTGACAAGGATGGCCGACCTGTTTACATTGAAAAGTTGG
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gtatcatcttgggaaaaagtcaattatagttggtttagatcacttgtatagaaaccacaattgggtggagtccaaccatttacattttctgagttcttaaccttataattctctgttcctagGATTTTGAATTCAAGGAAATTGATGATGTCCTTGAATACTACCCACAAGGACATCATGGAGTTGATAAAGATGGGCGGCCTGTTTATATTGAGAGACTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151394801|gb|EV264672.1|EV264672EST: AGATATGCTCAAGTGGAGGCAGGAATTTGGTGCTGACACTATCATGGGAG GATTTTGAATTCAATGAACTAGAGGAAGTTCTAAAATACTACCCACAAGG
genomic: AGATATGCTCAAGTGGAGGCAGGAATTTGGTGCTGACACTATCATGG-AGgtatttccgt ... tatcctcaagGATTTTGAATTCAATGAACTAGAGGAAGTTCTAAAATACTACCCACAAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttgtgtataacttttttatctatatatctaactataaattttttatcctcaagGATTTTGAATTCAATGAACTAGAGGAAGTTCTAAAATACTACCCACAAGGGCATCATGGGATTGACAAGGATGGCCGACCTGTTTACATTGAAAAGTTGG
atctaac putative branch site (score: 2)
ttttttatcctc putative PPT
tataacttttttatct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatttccgtgcaaaaataggaaaatcactcttcatggtgtgatcttttttgtgtataacttttttatctatatatctaactataaattttttatcctcaagGATTTTGAATTCAATGAACTAGAGGAAGTTCTAAAATACTACCCACAAGGGCATCATGGGATTGACAAGGATGGCCGACCTGTTTACATTGAAAAGTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG