1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttctaaatattttgctgttttttttttgttttttttttaaatagaactctgtgtgctctaacttagctaggaattacatggttattaacttttgtgcagCAACATATATTACATAAATGATAATTTGGATAAGAGGAGTTGGACTTACATCTTTGGAGCATGCTGTGCCACCACTGTATTTATCCCTTCCTTCCACAAC
species | Glycine max |
transcript | GLYMA06G00690.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
aactctgtgtgctctaacttagctaggaattacatggttattaacttttgtgcagCAACATATATTACATAAATGATAATTTGGATAAGAGGAGTTGGACTTACATCTTTGGAGCATGCTGTGCCACCACTGTATTTATCCCTTCCTTCCACAAC
tattaac putative branch site (score: 1)
cttttgt CT-rich tract
ttattaacttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctaaatattttgctgttttttttttgttttttttttaaatagaactctgtgtgctctaacttagctaggaattacatggttattaacttttgtgcagCAACATATATTACATAAATGATAATTTGGATAAGAGGAGTTGGACTTACATCTTTGGAGCATGCTGTGCCACCACTGTATTTATCCCTTCCTTCCACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - -tgctgtt
- - - - - - - - - - - - - - - - - - - -aaatagaa
- - - - - - - - - - - - - - - - - - - - - - - - - tgtgtgc