1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatcaaatttatgtttcgattctgtttcctatatcttgcaatgcctattttctggaagacacatatgactgattttttaaaatcttggacctaggttgagCAGCTGCACAAAATATTTAAGTTATGTGGCTCTCCATCTGATGAATACTGGAAGAAATATAGATTGCCAAATGCTACACTCTATAAGCCTCAGCAACCAT
species | Glycine max |
transcript | GLYMA05G38410.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTTTGGCAGAACTACTTGCTGGAAAGCCAACCATGCCTGGCCGAACAGAGGTTGAGEST: gi|22523556|gb|BU082367.1|BU082367
genomic: TTTTGGCAGAACTACTTGCTGGAAAGCCAACCATGCCTGGCCGAAC--A----GAGgtattgctct ... ctagg
EST: TTTTGGCAGAACTACTTGCTGGAAAGCCAACCATGCCTGGCCGAACAGAG GEST: gi|22523556|gb|BU082367.1|BU082367
genomic: TTTTGGCAGAACTACTTGCTGGAAAGCCAACCATGCCTGGCCGAACAGAGgtattgctct ... ctaggttgag-
EST: TTTTGGCAGAACTACTTGCTGGAAAGCCAACCATGCCTGGCCGAACAGAG GEST: gi|22523556|gb|BU082367.1|BU082367
genomic: TTTTGGCAGAACTACTTGCTGGAAAGCCAACCATGCCTGGCCGAACAGAGgtattgctct ... ctaggttgag-
EST: TTTTGGCAGAACTACTTGCTGGAAAGCCAACCATGCCTGGCCGAACAGAG GEST: gi|22523556|gb|BU082367.1|BU082367
genomic: TTTTGGCAGAACTACTTGCTGGAAAGCCAACCATGCCTGGCCGAACAGAGgtattgctct ... ctaggttgag-
EST: TTTTGGCAGAACTACTTGCTGGAAAGCCAACCATGCCTGGCCGAACAGAG GEST: gi|22523556|gb|BU082367.1|BU082367
genomic: TTTTGGCAGAACTACTTGCTGGAAAGCCAACCATGCCTGGCCGAACAGAGgtattgctct ... ctaggttgag-
EST: TTTTGGCAGAACTACTTGCTGGAAAGCCAACCATGCCTGGCCGAACAGAG GEST: gi|22523556|gb|BU082367.1|BU082367
genomic: TTTTGGCAGAACTACTTGCTGGAAAGCCAACCATGCCTGGCCGAACAGAGgtattgctct ... ctaggttgag-
EST: TTTTGGCAGAACTACTTGCTGGAAAGCCAACCATGCCTGGCCGAACAGAG GEST: gi|22523556|gb|BU082367.1|BU082367
genomic: TTTTGGCAGAACTACTTGCTGGAAAGCCAACCATGCCTGGCCGAACAGAGgtattgctct ... ctaggttgag-
EST: TTTTGGCAGAACTACTTGCTGGAAAGCCAACCATGCCTGGCCGAACAGAG GEST: gi|17153123|gb|BM143056.1|BM143056
genomic: TTTTGGCAGAACTACTTGCTGGAAAGCCAACCATGCCTGGCCGAACAGAGgtattgctct ... ctaggttgag-
EST: GGAAAGCCAACCATGCCTGGCCGAACTTATGTGAG CAGCTGCACAAAATATTTAAGTTATGTGGCTCTCCATCTGATGAATACTG
genomic: GGAAAGCCAACCATGCCTGGCCGAAC--A---GAGgtattgctct ... ctaggttgagCAGCTGCACAAAATATTTAAGTTATGTGGCTCTCCATCTGATGAATACTG
tattttctggaagacacatatgactgattttttaaaatcttggacctaggttgagCAGCTGCACAAAATATTTAAGTTATGTGGCTCTCCATCTGATGAATACTGGAAGAAATATAGATTGCCAAATGCTACACTCTATAAGCCTCAGCAACCAT
gactgat putative branch site (score: 3)
atatgactgatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatcaaatttatgtttcgattctgtttcctatatcttgcaatgcctattttctggaagacacatatgactgattttttaaaatcttggacctaggttgagCAGCTGCACAAAATATTTAAGTTATGTGGCTCTCCATCTGATGAATACTGGAAGAAATATAGATTGCCAAATGCTACACTCTATAAGCCTCAGCAACCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - tgtttcc
- - - - - - - - - - - - - - - - - cttgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttggac