1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcagtttgtaagtgtattgccattcacaagatgggatatgtatgcaatttccttgatacacatttaattctttatagcttttacatgactcgatgtgcagTTTTCATTGCCTTTACCCCAAGGTGGGAGGGATGCAGTGACAAAGAACCTCATTCTCCGTGAAGATCAACTTCCTCAAAGGGTACTTTATCCTAAAATGA
species | Glycine max |
transcript | GLYMA05G37950.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAATAGTATTAGCTGCCCGTCGACCAAGAGTTACATTACGTGGCACAAAG TTTTCATTGCCTTTACCCCAAGGTGGGAGGGATGCAGTGACAAAGAACCTCEST: gi|13312011|gb|BG405662.1|BG405662
genomic: GAATAGTATTAGCTGCCCGTCGACCAAGAGTTACATTACGTGGCACAAAGgtgagtatat ... cgatgtgcagTTTTCATTGCCTTTACCCCAAGGTGGGAGGGATGCAGTGACAAAGAACCTC
EST: GAATAGTATTAGCTGCCCGTCGACCAAGAGTTACATTACGTGGCACAAAG TTTTCATTGCCTTTACCCCAAGGTGGGAGGGATGCAGTGACAAAGAACCTCEST: gi|209705435|gb|BW668040.1|BW668040
genomic: GAATAGTATTAGCTGCCCGTCGACCAAGAGTTACATTACGTGGCACAAAGgtgagtatat ... cgatgtgcagTTTTCATTGCCTTTACCCCAAGGTGGGAGGGATGCAGTGACAAAGAACCTC
EST: GAATAGTATTAGCTGCCCGTCGACCAAGAGTTACATTACGTGGCACAAAG TTTTCATTGCCTTTACCCCAAGGTGGGAGGGATGCAGTGACAAAGAACCTC
genomic: GAATAGTATTAGCTGCCCGTCGACCAAGAGTTACATTACGTGGCACAAAGgtgagtatat ... cgatgtgcagTTTTCATTGCCTTTACCCCAAGGTGGGAGGGATGCAGTGACAAAGAACCTC
aatttccttgatacacatttaattctttatagcttttacatgactcgatgtgcagTTTTCATTGCCTTTACCCCAAGGTGGGAGGGATGCAGTGACAAAGAACCTCATTCTCCGTGAAGATCAACTTCCTCAAAGGGTACTTTATCCTAAAATGA
atttaat putative branch site (score: 4)
atttaattctttatag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagtttgtaagtgtattgccattcacaagatgggatatgtatgcaatttccttgatacacatttaattctttatagcttttacatgactcgatgtgcagTTTTCATTGCCTTTACCCCAAGGTGGGAGGGATGCAGTGACAAAGAACCTCATTCTCCGTGAAGATCAACTTCCTCAAAGGGTACTTTATCCTAAAATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - -ccattca
- - - - - - - - - - - - - - - - - - - -gtatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -atacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgac