Sequence
atgc intronic sequence ATGC exonic sequencegtatagaaaacgtgtgtcgttcaatcttcatccaatcataagcaaaattctgattagatgtctaatattttacactgaaagtgtatataaattaaactcagtttatactacatctctaacatatattacatgtggttaacatattgagtacccttttcttgttagGCTTCTGGGTACAGGGGCATGGTGGGGGATGGTATCAATGATTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACATTG
Basic information
species | Glycine max |
transcript | GLYMA05G37920.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G37920.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv02s0025g03640.t01 (Vitis vinifera), 3'ss of exon 4
gtatagaaaacgtgtgtcgttcaatcttcatccaatcataagcaaaattctgattagatgtctaatattttacactgaaagtgtatataaattaaactcagtttatactacatctctaacatatattacat-gtggttaacatattgagtacccttttcttgttagGCTTCTGGGTACAGGGGC---ATGGTGGGGGATGGTATCAATGATTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACATTG
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----------------------------------------------------------------------------gtatgaatgcgggcatcagtttcaggacatctgacttatatatgat-tatgatctcactgctattatccatggcttcattccactgc-agGCTTCAGGCAACATCGTCGCAATGGTTGGAGACGGCATTAATGATTCACCAGCTCTTGCAGCTGCAGATGTTGGTATGGCAATTGGTGCAGGCACAGACA---
upper sequence: GLYMA05G37920.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv02s0025g03630.t01 (Vitis vinifera), 3'ss of exon 5
gtatagaaaacgtgtgtcgttcaatcttcatccaatcataagcaaaattctgattagatgtctaatattttacactgaaagtgtatataaattaaactcagtttatactacatctctaacatatattacatgtggttaacatattgagtacccttttcttgttagGCTTCTGG--GTACAGGGGCA-TGGTGGGGGATGGTATCAATGATTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACATTG
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----------------------------------------------------------------------------------gtatgaatgtgaaaaatagttc-caagacatgcataatgatcattctcaatctgttaaatatcatgtcctcattccac---agGCTTCGGGCCATACCGTGGCAATGGTTGGAGATGGCATCAACGATTCTCCAGCCCTTGTAGCTGCAAATGTTGGAATGGCAATTGGTGCAGGCACAGACA--- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catctctaacatatattacatgtggttaacatattgagtacccttttcttgttagGCTTCTGGGTACAGGGGCATGGTGGGGGATGGTATCAATGATTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACATTG
tacccttttcttgtt CT-rich tract
taacatatattacat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatagaaaacgtgtgtcgttcaatcttcatccaatcataagcaaaattctgattagatgtctaatattttacactgaaagtgtatataaattaaactcagtttatactacatctctaacatatattacatgtggttaacatattgagtacccttttcttgttagGCTTCTGGGTACAGGGGCATGGTGGGGGATGGTATCAATGATTCACCAGCACTTGTGGCAGCAGATGTAGGAATGGCAATTGGTGCTGGTACAGACATTG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG