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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...caatcctttgcaagactacattctgctattattttatggactacctttctatcagttagaatgtggacttggaatataatataaggactgtgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGATGACCTGCACTTGGTAGAGCATGTGCTGGATTCATCTGCACAGGAGTATG

Basic information

species Glycine max
transcript GLYMA05G37150.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19054071|gb|BM732738.1|BM732738
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|298186732|gb|HO037365.1|HO037365
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATTTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCGGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|16346919|gb|BI972514.1|BI972514
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|151393946|gb|EV263817.1|EV263817
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|58017216|gb|CX703958.1|CX703958
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|19052822|gb|BM731489.1|BM731489
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|6726898|gb|AW311178.1|AW311178
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|9820495|gb|BE556005.1|BE556005
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|19936616|gb|BQ080944.1|BQ080944
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|9204105|gb|BE330329.1|BE330329
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|31468134|gb|CD410162.1|CD410162
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|9204646|gb|BE330870.1|BE330870
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|31476013|gb|CD418041.1|CD418041
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|151409500|gb|EV279308.1|EV279308
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|19270286|gb|BM886542.1|BM886542
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|151401846|gb|EV271659.1|EV271659
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|209728617|gb|BW660232.1|BW660232
EST:     GAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|58017411|gb|CX704153.1|CX704153
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|8826403|gb|BE210133.1|BE210133
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|4313631|gb|AI460750.1|AI460750
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|7285006|gb|AW597493.1|AW597493
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|6913767|gb|AW395297.1|AW395297
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAGAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|5687988|gb|AI941003.1|AI941003
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|8827226|gb|BE210956.1|BE210956
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTGTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|151400393|gb|EV270207.1|EV270207
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|208108234|gb|GD905728.1|GD905728
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
EST: gi|192322756|gb|FK014447.1|FK014447
EST:     GTCATCATCATCATGAGTACAGAAACCTTCTAAAAGATCTCATTGTTCAG                         TGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT
genomic: GTCATCATCATCATGAGTACAGAAACCTTCTGAAAGATCTCATTGTTCAGgtcagttaaa ... tgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctatcagttagaatgtggacttggaatataatataaggactgtgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGATGACCTGCACTTGGTAGAGCATGTGCTGGATTCATCTGCACAGGAGTATG
                       ttggaatataatataa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caatcctttgcaagactacattctgctattattttatggactacctttctatcagttagaatgtggacttggaatataatataaggactgtgtgttacagTGTTTGCTTAGACTGAAAGAACCTTCAGTCCTATTGAGATGTCGGAAAGATGACCTGCACTTGGTAGAGCATGTGCTGGATTCATCTGCACAGGAGTATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - cctttgc
- - - - - - -gactaca
- - - - - - - - - - ttctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgtg