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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaaccttgaacccaaaattttcttttacaccatatgcatcttttgctagcaattctaaagcaatatggcttaacaagtttttgttttaacttacttttgttcacctaatgacaacttgattctctatcaccggaaaaaaaaaaaagGTAATGGAGAGCTTGGAGAGTGCAACAAAAAGGGGAGCCAGAATAATAGCAGAATATTTGGGGGGTGCCATAACATGTGATGATCATCACATGACTGATC

Basic information

species Glycine max
transcript GLYMA05G36690.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G36690.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv02s0025g01730.t01 (Vitis vinifera), 3'ss of exon 3
gtagaaccttgaacccaaaattttcttttacaccatatgcatcttttgctagcaattctaaagc--aatatggcttaacaagtttttgttttaacttacttttgttcacctaatgacaacttgattctctatcaccggaaaaaaaaaaaagGTAATGGAGAGCTTGGAGAGTGCAACAAAAAGGGGAGCCAGAATAATAGCAGAATATTTGGGGGGTGCCATAACATGTGATGATCATCACATGACTGATC
         | |   |||||||    ||  |  ||| | | |  |||||||| | |   | | |  | |   | |   |    | || |||| | ||  |||||   || | ||    |||    ||  | |||  |  ||||      || | |||||||||||||||  |||||  ||||| |||||||  ||||| ||||| |||||||| ||||| || |||||||||| |||||| ||||| ||||
--------gtaataacaaaattgatgttgtcttcat-tacttgatttgctagtattgtaacaactcatttatgttaggctgcatcttattttcatttgattttggg-acttcatatttactaagctcggt-tcattgtcaaaa------agATTATGGAGAGCTTGGAGCATGCAATGAAAAGAGGAGCCAATATAATTGCAGAGTATTTGGGAGGTGCTATTACATGTGATGCTCATCATATGACCGATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacttttgttcacctaatgacaacttgattctctatcaccggaaaaaaaaaaaagGTAATGGAGAGCTTGGAGAGTGCAACAAAAAGGGGAGCCAGAATAATAGCAGAATATTTGGGGGGTGCCATAACATGTGATGATCATCACATGACTGATC
                                          aaaaaaaaaaaa  TA-rich tract