1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ctttctgttttcaaagagaaccctcttctactaggtttctcagacattcattgactgagcatcgtaatctgacagttactccttcatggtttgtttgtagGTTGGTGAAGATGTGGTGGGAGAACTAACCAAGTCCATGGAAAAAATTGGCCTGGATATGCGCGTTGCTGCTCTA
species | Glycine max |
transcript | GLYMA05G35890.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATCTGGGACTCTAATAAAGTGGACTAAAGGTTTCAATATTGAAGATGTG GTTGGTGAAGATGTGGTGGGAGAACTAACCAAGTCCATGGAAAAAATTGGC
genomic: CATCTGGGACTCTAATAAAGTGGACTAAAGGTTTCAATATTGAAGATGTGgtaattcttg ... ttgtttgtagGTTGGTGAAGATGTGGTGGGAGAACTAACCAAGTCCATGGAAAAAATTGGC
attcattgactgagcatcgtaatctgacagttactccttcatggtttgtttgtagGTTGGTGAAGATGTGGTGGGAGAACTAACCAAGTCCATGGAAAAAATTGGCCTGGATATGCGCGTTGCTGCTCTA
atctgac putative branch site (score: 3)
tttgttt putative PPT
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttctgttttcaaagagaaccctcttctactaggtttctcagacattcattgactgagcatcgtaatctgacagttactccttcatggtttgtttgtagGTTGGTGAAGATGTGGTGGGAGAACTAACCAAGTCCATGGAAAAAATTGGCCTGGATATGCGCGTTGCTGCTCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
ctttctg
- - - - - - aaagagaa
- - - - - - - - - - ccctctt
- - - - - - - - - - - - - - - - - - - - - -acattca
- - - - - - - - - - - - - - - - - - - - - - - - - ttgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgaca