1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...catatctatattccatgttgtatattcacttcccaagaatctaccataataaatattttattttgattatgattggctggcgtttgaatctattttgaagGTTGGGGCCATAGTTTCATATTACAAGATTCCACTGAAGCAAGTACTTGTG
species | Glycine max |
transcript | GLYMA05G35220.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGTCATACTTGCAAAACCACAGACTTATATGAATTCAAGTGGTGAATCT GTTGGGGCCATAGTTTCATATTACAAGATTCCACTGAAGCAAGTACTTGTGEST: gi|298185189|gb|HO030402.1|HO030402
genomic: CAGTCATACTTGCAAAACCACAGACTTATATGAATTCAAGTGGTGAATCTgtaagtctgc ... tattttgaagGTTGGGGCCATAGTTTCATATTACAAGATTCCACTGAAGCAAGTACTTGTG
EST: CAGTCATACTTGCAAAACCACAGACTTATATGAATTCAAGTGGTGAATCT GTTGGGGCCATAGTTTCATATTACAAGATTCCACTGAAGCAAGTACTTGTGEST: gi|151403649|gb|EV273459.1|EV273459
genomic: CAGTCATACTTGCAAAACCACAGACTTATATGAATTCAAGTGGTGAATCTgtaagtctgc ... tattttgaagGTTGGGGCCATAGTTTCATATTACAAGATTCCACTGAAGCAAGTACTTGTG
EST: CAGTCATACTTGCAAAACCACAGACTTATATGAATTCAAGTGGTGAATCT GTTGGGGCCATAGTTTCATATTACAAGATTCCACTGAAGCAAGTACTTGAG
genomic: CAGTCATACTTGCAAAACCACAGACTTATATGAATTCAAGTGGTGAATCTgtaagtctgc ... tattttgaagGTTGGGGCCATAGTTTCATATTACAAGATTCCACTGAAGCAAGTACTTGTG
ataataaatattttattttgattatgattggctggcgtttgaatctattttgaagGTTGGGGCCATAGTTTCATATTACAAGATTCCACTGAAGCAAGTACTTGTG
ttttgat putative branch site (score: 4)
tctatttt putative PPT
aaatattttattttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatctatattccatgttgtatattcacttcccaagaatctaccataataaatattttattttgattatgattggctggcgtttgaatctattttgaagGTTGGGGCCATAGTTTCATATTACAAGATTCCACTGAAGCAAGTACTTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - ccatgtt
- - - - - - - - - - - - - - cttccca
- - - - - - - - - - - - - - - - - - - -tctacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctgg