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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtaatcttgtacttttctttctagtctagtgtagcaagtacaagattgtttttcatttttatttcttcagacttgtattcttaaataacttctgttattctgtttagAGAACAATTACAATGAGGAAAAAGGAAGGGCTTGCTGATTATCGATATTTTCCAGAACCAGACCTTCCAGCAGTAATCCTTTCTCAAGAATATGTTGATG

Basic information

species Glycine max
transcript GLYMA05G34500.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34500.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os11g34210.1 (Oryza sativa), 3'ss of exon 4
gtgtaatcttgtacttttctttctagtctagtgtagcaagtacaagattgtttttcatttttatttcttcagacttgtattcttaaataacttctgttattctgtttagAGAACAATTACAATGAGGAAAAAGGAAGGGCTTGCTGATTATCGATATTTTCCAGAACCAGACCTTCCAGCAGTAATCCTTTCTCAAGAATATGTTGATG
      |  | |   |  |||| |   || ||||  |         |||||  ||  ||  ||    |||  |  | |  | || | |   |  |   || ||    ||| |||  |||||||| | |||||||| || |||||||||||| |||||||||| || || || ||||| | |||  | ||| ||   || ||  ||||||
----gttactatgtctcactttgttaacttgtgtttccgccc----attgtcctt--ttgctaccatttctaaactctgctatttattgtttatttgcatcct---cagAAAACTTTTACAATGCGAAAAAAGGAGGGACTTGCTGATTATAGATATTTTCCTGAGCCTGATCTTCCTGAAGTTGTTCTTACTAGTGAGTACATTGATG

upper sequence: GLYMA05G34500.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G091560_T01 (Zea mays), 3'ss of exon 3
gtgtaatcttgtacttttctttctagtctagtgtagc-aagtacaagattgtttttcatttttatttcttcagacttgtattcttaaataacttctgttattctgtttagAGAACAATTACAATGAGGAAAAAGGAAGGGCTTGCTGATTATCGATATTTTCCAGAACCAGACCTTCCAGCAGTAATCCTTTCTCAAGAATATGTTGATG
                            |  |||  | || |  ||  || |||| |    || ||||| |  | |  || |     ||    ||| |     |  | ||| |||  |||||||| | |||||||| || ||||| || ||| |||||||||||||||| || ||||| | |||| |  |  ||   || ||| || |||
--------------------------gttgttgtccccaactctaacctttttttgctggcttttttctaccaagtactaatt----attttctctatctacatcatcagAAAACTTTTACAATGCGAAAAAAGGAGGGACTTGCCGACTATAGATATTTTCCAGAACCTGATCTTCCTGAAGTAGTTATCACTAGTGACTATATTAATG

upper sequence: GLYMA05G34500.1 (Glycine max), 3'ss of exon 3
lower sequence: AT1G48520.3 (Arabidopsis thaliana), 3'ss of exon 3
gtgtaatcttgtacttttctttctagtctagtgtagcaagtacaagattgtttttcatttttatttcttcagacttgtattcttaaataacttctgttattctgtttagAGAACAATTACAATGAGGAAAAAGGAAGGGCTTGCTGATTATCGATATTTTCCAGAACCAGACCTTCCAGCAGTAATCCTTTCTCAAGAATATGTTGATG
                                ||   |||   ||  |  ||  |||       | ||||    ||  ||    || ||||||  ||     |||| ||| |||| | |||||||||||||||||||||||||||||||| || || |||||||||||||| ||||||| ||| |||||| | ||||||||||||||| 
--------------------------------gttctaagctaaaactctttcatca-----ggtgcttcctttttccatcagcaactaacttgagtaga--tgttcagAAAACAGTAACAATGAGGAAAAAGGAAGGGCTTGCTGATTACCGCTACTTTCCAGAACCAGATCTTCCAGAAGTTATCCTTACCCAAGAATATGTTGATA

upper sequence: GLYMA05G34500.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0049g02140.t01 (Vitis vinifera), 3'ss of exon 4
--------------------------gtgtaatcttgtacttttctttctagtcta-gtgtagcaagtacaagat-tgtttttcatttttatttcttcaga---cttgtattcttaaataacttctgttattctgtttagAGAACAATTACAATGAGGAAAAAGGAAGGGCTTGCTGATTATCGATATTTTCCAGAACCAGACCTTCCAGCAGTAATCCTTTCTCAAGAATATGTTGATG
                           | || | || |  |||||||| |  | |  ||| |   | || ||||  ||   ||||  |   |  ||  ||    ||| | | ||  |  ||||| |||| |  ||| |||| |||  |||||||||| || |||||||| ||| | |||||||||||||| || || || || ||||||| |||||| ||| || | || ||||||| | 
gttgtagctacatccttggtttttccctttattgttttttttttctttttcttttttgtggaatcaatataagaaatgaaattcacatagttgcctcaaggatgcttatttgctctagcaacttttgttgtaatgtgtagAAAACGGTTACAATGAGAAAGAAGGAAGGTCTTTCCGATTATCGATATTTCCCTGAGCCTGATCTTCCAGAAGTAATTCTTACTGAGGATTATGTTGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatttttatttcttcagacttgtattcttaaataacttctgttattctgtttagAGAACAATTACAATGAGGAAAAAGGAAGGGCTTGCTGATTATCGATATTTTCCAGAACCAGACCTTCCAGCAGTAATCCTTTCTCAAGAATATGTTGATG
                              aaataac  putative branch site (score: 2)
                                             ttctgttt  putative PPT
                    ttgtattcttaaataa  TA-rich tract