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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttggacttcattcaaatggcctttcagtttgtgtttttttattgatgatgatgcttttctgcagttgttgctctggggcagAATTTTGACTGATGGGAGGCTCAATGCCAGAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAG

Basic information

species Glycine max
transcript GLYMA05G34360.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34360.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0097g00590.t01 (Vitis vinifera), 3'ss of exon 3
----------------------------------------------gtaacttggacttcattcaaatggcctt--tcagt-ttgtgtttttttattgatg-atgat--gcttttctgcagttgttgctctggggcagAATTTTGACTGATGGGAGGCTCAATGCCAGAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAG
                                              |||   ||   | ||   |  | |  ||  | | | |||  |      ||||  | ||  |  | |  |   |||||| |||| |  || ||||| ||||| || |||||||| ||||| ||||| |||||||||||| | |||||||||||| | || || |||||||||
gtaggcctaatttttcagatttacttttatgggaaatatcttattggtagtgtgatgtgcaactagtttgttttcatgaatgttgaatgaaagcattggagcatttttggttgcttaacagTTGATGCTTTTTGGGAGAATATTGACCGACGGGAGGCTGAATGCAAGAGTGAAGTGTGATTTGACTGAAAATCTCACTCTGAAGGCTAATGCTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgtgtttttttattgatgatgatgcttttctgcagttgttgctctggggcagAATTTTGACTGATGGGAGGCTCAATGCCAGAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAG
             tattgat  putative branch site (score: 3)
                                         ttgctct  putative PPT
       tttttttattgatgat  TA-rich tract