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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttggacttcattcaaatggcctttcagtttgtgtttttttattgatgatgatgcttttctgcagTTGTTGCTCTGGGGCAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAG

Basic information

species Glycine max
transcript GLYMA05G34360.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G34360.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0097g00590.t01 (Vitis vinifera), 3'ss of exon 3
----------------------------------------------gtaacttggacttcattcaaatggcctt--tcagt-ttgtgtttttttattgatg-atgat--gcttttctgcagTTGTTGCTCTGGGGCAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAG
                                              |||   ||   | ||   |  | |  ||  | | | |||  |      ||||  | ||  |  | |  |   |||||| |||| |  || ||||| ||||| || |||||||| ||||| ||||| |||||||||||| | |||||||||||| | || || |||||||||
gtaggcctaatttttcagatttacttttatgggaaatatcttattggtagtgtgatgtgcaactagtttgttttcatgaatgttgaatgaaagcattggagcatttttggttgcttaacagTTGATGCTTTTTGGGAGAATATTGACCGACGGGAGGCTGAATGCAAGAGTGAAGTGTGATTTGACTGAAAATCTCACTCTGAAGGCTAATGCTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533034|gb|EH261167.1|EH261167
EST:     CTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGG                         TTGTTGCTCTGGGGGAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC
genomic: CTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGGgtaacttgga ... ttttctgcagTTGTTGCTCTGGGGCAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC
EST: gi|193658120|gb|FK602007.1|FK602007
EST:     TTCCAACTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGG                         TTGTTGCTCTGGGGCAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC
genomic: TTCCAACTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGGgtaacttgga ... ttttctgcagTTGTTGCTCTGGGGCAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC
EST: gi|192296647|gb|FG991215.1|FG991215
EST:     TTCCAACTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGG                         TTGTTGCTCTGGGGCAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC
genomic: TTCCAACTGCTCACTATGAGTTTGGCTCAACCTTCATTGATCACCCTAGGgtaacttgga ... ttttctgcagTTGTTGCTCTGGGGCAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcaaatggcctttcagtttgtgtttttttattgatgatgatgcttttctgcagTTGTTGCTCTGGGGCAGAATTTTGACTGATGGGAGGCTCAATGCCAGAGTCAAGTGTGATTTGTCCGAAAATCTCACTTTTAAAGCCAATGCTCAG
                              tattgat  putative branch site (score: 3)
                                          tgcttttct  putative PPT
                  tttgtgtttttttatt  TA-rich tract