1 5' 3' | 2 5' 3' | 3 5' 3' |
...aatctgtcattattttaaactattttctgtaatccgtaacttgcagcaagatttctcactgttctagatcctgattgcagtgtgcttattgttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGGGTGGAGAATGTGCTTTTGGAGGAGGGGAATGCTACAATTCTGACCCTCT
species | Glycine max |
transcript | GLYMA05G33770.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAAGCTTGEST: gi|58021435|gb|CX708176.1|CX708176
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAA-GCTTG
EST: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGGEST: gi|7686403|gb|AW757051.1|AW757051
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGGEST: gi|58015158|gb|CX701900.1|CX701900
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGGEST: gi|208317341|gb|GE111936.1|GE111936
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGGEST: gi|208128834|gb|GD930542.1|GD930542
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG GTACAGGTGATTGACTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGGEST: gi|192312144|gb|FK003893.1|FK003893
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGGEST: gi|192303882|gb|FG998234.1|FG998234
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGGEST: gi|10232028|gb|BE800916.1|BE800916
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGGEST: gi|7147263|gb|AW509185.1|AW509185
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGGEST: gi|6746941|gb|AW317397.1|AW317397
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGGEST: gi|192312143|gb|FK003892.1|FK003892
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
EST: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTG GTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
genomic: TGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCGTGgtgagtttct ... gttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGG
gcaagatttctcactgttctagatcctgattgcagtgtgcttattgttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGGGTGGAGAATGTGCTTTTGGAGGAGGGGAATGCTACAATTCTGACCCTCT
ttgtttt CT-rich tract
ttattgttttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatctgtcattattttaaactattttctgtaatccgtaacttgcagcaagatttctcactgttctagatcctgattgcagtgtgcttattgttttattagGTACAGGTGATTGATTCATTGCCAGAGCTGTATCCTAAATTAGAAGCTTGGGTGGAGAATGTGCTTTTGGAGGAGGGGAATGCTACAATTCTGACCCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- tctgtca
- - - - - - - - - - - - ttctgta
- - - - - - - - - - - - - - - - - - - - -tgcagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtgct