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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaatttcgtatcgtcaaaaacttgtctttttcttttttactcctttcttatggttaacaatttaatttgcagCTTGATAGAGTGTCTAGCATTGCTGCCAAGTACATTGGAAGACCAATTTCCCAACTCCCGCCGGTCCAGCCTATTCATATATCGTCTCTGGACTTATCAA

Basic information

species Glycine max
transcript GLYMA05G33520.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33520.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 3
---------------------gtcaatttcgtatcgtcaaaaacttgtctttttcttttttactcctttcttatggttaacaatttaatttgcagCTTGATAGAGTGTCTAGCATTGCTGCCAAGTACATTGGAAGACCAATTTCCCAACTCCCGCCGGTCCAGCCTATTCATATATCGTCTCTGGACTTATCAA
                      |   ||| | ||  |    |  || |       ||||  | |  |   || |  ||       |  | |||||||||||||||| ||||||||||||||||||||||| ||  | || ||||| || ||||| || || |||||| | ||||| || ||  |||| || ||||
gttgtttgtgatgtttctcgtctgtgttttggattatttggagattattaggcgattttggaatgttaatttgt--ttgtttggatgctatgcagCTTGATAGAGTTTCTAGCATTGCTGCCAAGTACATAGGGCGGCCGATTTCACAGCTCCCACCAGTACAGCCTGTCCATATTTCTTCATTGGATTTGTCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacttgtctttttcttttttactcctttcttatggttaacaatttaatttgcagCTTGATAGAGTGTCTAGCATTGCTGCCAAGTACATTGGAAGACCAATTTCCCAACTCCCGCCGGTCCAGCCTATTCATATATCGTCTCTGGACTTATCAA
                              ttatggttaacaattt  TA-rich tract