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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtataaaaactaaaacttaaaaatggggacaactataggaaccacgtgaatagtttaaccttattattaaggagctgagaattgctatggatatgggcagTGCTGTCTTGGCACATTTTCTCTTGAAGGAGAAGCTGCAGAAAATGGGCATGTTGGGGTGTCTTCTGTGCATTGTGGGATCAACTGTTATTGTGTTGCAT

Basic information

species Glycine max
transcript GLYMA05G33020.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G33020.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0031g02960.t01 (Vitis vinifera), 3'ss of exon 3
gtataaaaactaaaacttaaaaatggggacaactataggaaccacgtgaatagtttaaccttattattaaggagctgagaattgc-tatggatatgggcagTGCTGTCTTGGCACATTTTCTCTTGAAGGAGAAGCTGCAGAAAATGGGCATGTTGGGGTGTCTTCTGTGCATTGTGGGATCAACTGTTATTGTGTTGCAT
            ||| |||    | |       |            |   || | |||   | |     ||||  || | | |   ||||   ||||  |||||||| || || || ||| | ||||| ||||| || ||||||||||| ||| ||||||||||||| ||||| ||||||||    || |||||| | |||
----------gtaaatttatttcttgatgatttttcttttcttttttctttattctaaaagtttctaacaggatgtgtgtactatgtatgccaatggatagTGCTGTTTTAGCGCACTTTTTGTTGAATGAGAAACTACAGAAAATGGGGATGCTGGGGTGTCTTCTATGCATAGTGGGATCTGTAGTGATTGTGCTCCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213602237|gb|DB958497.1|DB958497
EST:     GCCCCTGCTGTTCTTGTTACTCCACTCGGTGCTTTGAGCATTATTGTTAG                         TGCTGTCTTGGCACATTTTCTCTTGAAGGAGAAGCTGCAGAAAATGGGCAT
genomic: GCCCCTGCTGTTCTTGTTACTCCACTCGGTGCTTTGAGCATTATTGTTAGgtaaatattt ... atatgggcagTGCTGTCTTGGCACATTTTCTCTTGAAGGAGAAGCTGCAGAAAATGGGCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaatagtttaaccttattattaaggagctgagaattgctatggatatgggcagTGCTGTCTTGGCACATTTTCTCTTGAAGGAGAAGCTGCAGAAAATGGGCATGTTGGGGTGTCTTCTGTGCATTGTGGGATCAACTGTTATTGTGTTGCAT
       gtttaac  putative branch site (score: 3)
        tttaaccttattatta  TA-rich tract