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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatttaatatttatattattttaagtctcttgaatatttgttcttggaagtcatctaaaacctaccttctgaattctgatgcacctactgccagATGATGAGGAATCAAGACAGTGCTTCCTTGCCGGTCTAGTAATTAGAAGTTTGAGTATCAG

Basic information

species Glycine max
transcript GLYMA05G32190.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254323385|gb|GR835886.1|GR835886
EST:     GACAAATCCACATATTGGTAACACTGGTGTAAATTTTG                         ATGATGAGGAATCAAGACAGTGCTTCCTTGCCGGTCTAGTAATTAGAAGTT
genomic: GACAAATCCACATATTGGTAACACTGGTGTAAATTTTGgtaagtattt ... ctactgccagATGATGAGGAATCAAGACAGTGCTTCCTTGCCGGTCTAGTAATTAGAAGTT
EST: gi|22524996|gb|BU083807.1|BU083807
EST:     GTTTGTACTGATGACAAATCCACATATTGGTAACACTGGTGTAAATTTTG                         ATGATGAGGAATCAAGACAGTGCTTCCTTGCCGGTCTAGTAATTAGAAGTT
genomic: GTTTGTACTGATGACAAATCCACATATTGGTAACACTGGTGTAAATTTTGgtaagtattt ... ctactgccagATGATGAGGAATCAAGACAGTGCTTCCTTGCCGGTCTAGTAATTAGAAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcttggaagtcatctaaaacctaccttctgaattctgatgcacctactgccagATGATGAGGAATCAAGACAGTGCTTCCTTGCCGGTCTAGTAATTAGAAGTTTGAGTATCAG
                                  ttctgat  putative branch site (score: 3)
             atctaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtatttaatatttatattattttaagtctcttgaatatttgttcttggaagtcatctaaaacctaccttctgaattctgatgcacctactgccagATGATGAGGAATCAAGACAGTGCTTCCTTGCCGGTCTAGTAATTAGAAGTTTGAGTATCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT