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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatgtaatgttatggtttctctgattccaggtaatagattattttggagcttctacactactcctgagttctaacattgcaaatcataactattatgcagCTACAACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGCTGACAGTCTTTCTTAAGTGGCTGGGATATGTCCAAACCTCTCACCTTCCCTTACCTGA

Basic information

species Glycine max
transcript GLYMA05G31940.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31940.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0031g01860.t01 (Vitis vinifera), 3'ss of exon 2
------aatgtaatgttatggtttctctgattccaggtaatagattattttggagcttctaca--ctactcctgagttctaacattgcaaatcataactattatgcagCTACAACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGCTGACAGTCTTTCTTAAGTGGCTGGGATATGTCCAAACCTCTCACCTTCCCTTACCTGA
      ||| |  ||||      | | |    |   | | ||| || | |  |||||| || |  |||    || || | |  ||         |   |||  | |||| || |||||||||||||||||||||||||||||||||||| ||||     |||||| ||||||||||||  ||||   ||| || || ||  || ||||
attggaaattttgtgttcacacatttatctgccttaggagtagcttctctgtgagcttatatatactaagattgtgtccaattatc--------ttgttatcctacagCGACTACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGATGACTACTGTTCTTAGGTGGCTGGGATACATCCAGGGCTCCCATCTACCAGTATCTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408339|gb|EV278147.1|EV278147
EST:     AATAATCCTTGTGAATAAAGCCCTCATGGCTACATATGGTTTCAGCTTTG                         CTACAACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGCTGACAGTCT
genomic: AATAATCCTTGTGAATAAAGCCCTCATGGCTACATATGGTTTCAGCTTTGgtatacagtt ... tattatgcagCTACAACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGCTGACAGTCT
EST: gi|208198175|gb|GD996806.1|GD996806
EST:     AATAAT-CTTGTGAATAAAGCCCTCATGGCTACATATGGTTTCAGCTTTG                         CTACAACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGCTGACAGTCT
genomic: AATAATCCTTGTGAATAAAGCCCTCATGGCTACATATGGTTTCAGCTTTGgtatacagtt ... tattatgcagCTACAACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGCTGACAGTCT
EST: gi|298180404|gb|HO021957.1|HO021957
EST:     AATAATCCTTGTGAATAAAGCCCTCATGGCTACATATGGTTTCAGCTTTG                         CTACAACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGCTGACAGTCT
genomic: AATAATCCTTGTGAATAAAGCCCTCATGGCTACATATGGTTTCAGCTTTGgtatacagtt ... tattatgcagCTACAACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGCTGACAGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggagcttctacactactcctgagttctaacattgcaaatcataactattatgcagCTACAACGTTAACTGGTCTGCATTTTGCCACAACAACCTTGCTGACAGTCTTTCTTAAGTGGCTGGGATATGTCCAAACCTCTCACCTTCCCTTACCTGA
                                   aaatcataactattat  TA-rich tract