Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gattttttgtatgcttaaactttaattaaaataaaattgaagaacgtgttggggagaagtacattgatgatgttttaattgtctgggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG

Basic information

species Glycine max
transcript GLYMA05G31450.4
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g09250.3 (Oryza sativa), 3'ss of exon 6
--------gattttttgtatgcttaaactt-taattaaaataaaattgaagaacgtgttggggagaagtacattgatg-atgttttaattg----tctgggtgatgagtg-acagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG
         || | |   || |||   ||     ||   ||  ||  |  ||   | ||  ||| |  |   || ||  ||    | ||      | ||| |  ||  |    |||| || || || || || ||||||||  |||| || |||||||||||||| || || || |||||||| ||||| || ||||| ||||||||||||||||
gtaccaaccatatatcaaatcctttggctagcttttcgcattgaaacgtcgatattcttccggaaacttttttttatatataacctgataagaactttggcttttgttttcgtagCCCACCTCAATTGTCAGCTACAACCACTTGGGGAATAATGATGGCATGAACCTTTCCGCACCTCAAACATTCCGATCCAAGGAGATCTCCAAGAGCAATG

upper sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G071174_T01 (Zea mays), 3'ss of exon 1
-------------------------------------------------------gattttttgtatgc----ttaaactttaattaaaataaaattgaagaacg----tgttggggagaagtacattgatgatgttttaattgtctgggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG
                                                       |||  ||||| |      || ||   ||||  |   |   || || |  |    | ||   ||   | ||||||  |||  |    | |  | | |  |    |  |||| || || || |  || |||||||||||||| ||||| || |||||||||||||| ||||| |||  |||||| || || || |||||||||||||  |
gtacgtaccatcgtcatatatgtatatctctatatataatgctgggattaattaagataatttgtgtttgacattcaagaataatctatccatctttaaatattggaattattaaagattggcacattg--gataataaggtggatttgttttttcccg-tagCCCACCTCAATTGCAAGCTACAACCATCTGGGAAACAACGACGGCATGAATCTCTCTGCCCCACAAGTCTTCCGGTCCAAAGAGATCTCCAAGAGCAGCG

upper sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G177461_T01 (Zea mays), 3'ss of exon 6
-----------------------------------------gattttttgtatgcttaaactttaattaaaataaaattgaagaacgtgttggggag----aagtacattgatgatgttttaattgtctgggtgatga----gtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG
                                          ||| ||||| |  | | | |  |    ||   || || |  | | | |  |  |     | ||  |||  |  | | ||  || | |  ||| |      ||   |||| || || || |  || |||||||| || || ||||||||||||||||||||||| || || |||  |||||| ||||| || |||||||||||||  |
gtacattccttgtctattgctgggggcctgggattaagatgaattatttgtct-ttcacattcaagaataatcgaactttattagcatatcagataatataaggtggattctttttttctttctttttttcgtgtttgtgctgtcgtagCCCACCTCAATTGCTAGCTACAACCACCTAGGAAACAATGATGGCATGAATCTCTCTGCGCCACAAGTCTTCCGGTCTAAAGAGATCTCCAAGAGCAGCG

upper sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G155242_T01 (Zea mays), 3'ss of exon 6
gattttttgtatgcttaaactttaattaaaataaaattgaagaacgtgttggggagaagtacattgatg--atgttttaattgtctgggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG
       ||    | ||   | |   |   || ||  |||||    | || || | | | || ||  ||  ||   |    | | |      |      ||||| || || || ||||| ||||||||  |||| ||||| ||||||||||| || || ||||||||||| ||| | || ||||| |||||||||||||| |
------gtgggaacctagtatctctcttctattaagatgaagtgtttttttggcaaatg-acgttattgcaataactcttctatattttcattttcatgcagCCCACCTCAATCGTGAGCTACAACCACTTGGGAAACAACGATGGCATGAACCTGTCTGCCCCTCAAACATTCAGGTCCAAGGAGATCTCCAAGAGCAACG

upper sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 6
gattttttgtatgcttaaactttaattaaaataaaattgaagaacgtgttggggaga-agtacattgatgatgttttaattgtctgggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG
  |    | |||   | ||   | ||   |       |    || || || || |||    | | | |  ||  ||    | | ||  | |||     ||||| || || || ||||| ||||||||  |||| ||||| || |||||||| || || ||||||||||| ||| | || ||||| |||||||||||||| |
-gtacaatttatcaatgaaacctgat---atccccccttcgaaatgtttttggcagacgacatacttacaataattcgtgtatatgt-tcatg-----cagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGGCATGAACCTGTCTGCCCCTCAAACATTCAGGTCCAAGGAGATCTCCAAGAGCAACG

upper sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G145638_T02 (Zea mays), 3'ss of exon 2
gattttttgtatgcttaaactttaattaaaataaaattgaagaacgtgttggggagaagt-acattgatgatgttttaattgtctgggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG
  |    | |||   | ||   | ||   |       |    || || || || ||| || | | | |  ||  ||    | | ||  | |||     ||||| || || || ||||| ||||||||  |||| |||||  | |||||||| || || ||||||||||| ||| | || ||||| |||||||||||||| |
-gtacaatttatcaatgaaacctgat---atccccccttcgaaatgtttttggcagacgtcatacttacaataattcttgtatatgt-tcatg-----cagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACAACGGCATGAACCTGTCTGCCCCTCAAACATTCAGGTCCAAGGAGATCTCCAAGAGCAACG

upper sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G392513_T02 (Zea mays), 3'ss of exon 4
gattttttgtatgcttaaactttaattaaaataaaattgaagaacgtgttggggagaagtac-----attgatgatgttttaattgtctgggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG
  ||  ||     | |||    | ||| ||||    |||   |     |     | |  ||      ||||   | |    | ||  ||   | ||   || ||||| || || || ||||| ||||||||  |||| ||||| || | |||||| || || ||||||||||| ||| | || ||||| |||||||||||||| |
-cttcatttagcacataagaacttatttaaatgtg-ttgggcacttaatcaccaaaacataatagaaattgccaagggcacatttccctt--tcattcatg-cagCCCACCTCGATTGTGAGCTACAACCACTTGGGAAACAACGACGACATGAACCTGTCTGCCCCTCAAACATTCAGGTCCAAGGAGATCTCCAAGAGCAACG

upper sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 3
lower sequence: AT5G10170.1 (Arabidopsis thaliana), 3'ss of exon 6
gattttttgtatgcttaaactttaattaaaataaaattgaagaacgtgttggggagaagtacattgatgatgttttaattgtctgggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG
           | ||||| | | ||| |  ||   | | ||     | ||     | |        |       |||||||  |   |    |   | |||| || || || || |||||||||||||| || ||||| || ||||||||  | ||||| |||||||| ||||| || ||||| || || ||||||||||
----------gtacttaatcctaaataagtatcctaattaaatttattttatatggtaacgttacaaaacgaaattaattgcatttatctatatgtatagCCGACGTCGATTGTCAGTTACAACCATCTTGGGAACAACGACGGCATGAACTTGTCAGCACCTCAAACATTCCGGTCAAAGGAGATATCGAAGAGCAATG

upper sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 3
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 3'ss of exon 6
---gattttttgtatgcttaaactttaattaaaataaaattgaagaacgtgttggggagaagtacattgatgatgttttaattgtctgggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG
     |||    |  |  | || ||    |    |   | |||| |   | || |  | ||| || ||| |  |   || ||||| ||  |  |   | | |||| || || || ||||| ||||| ||  |||| ||||| ||||| |||||||||||||| || || || ||| | |||||||| |||||||| |||||||
gtttgtttaacttgcgtatcaagttactctttcttgttactgaaaa---tatttgtcacaag-actttggt--ttcattgattgtgtg--tttttgtttatagCCTACTTCAATTGTGAGCTACAATCACTTGGGAAACAACGATGGAATGAATCTCTCAGCTCCACAGACTTTCAGATCTAAGGAGATCTCCAAAAGCAATG

upper sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 6
-------------gattttttgtatgcttaaactttaa--ttaaaataaaattgaagaacgtgt-tggggagaagtac-attgatgatgttttaattgtctgggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG
                 |||  | || | ||| ||  |  || |||  ||||       | ||| | ||   | |||  | | ||||| ||  ||   |   | || || ||||||||||||||| || ||||| || ||||||||||| ||||| |||||||||||||| || || ||||||||||||||||| ||||| ||||||||||||||||
gtatatcatttttagcatttcctctgttgaaatttagaattttaaagtaaataagtatgcatgtataggattatgtatgaataatgatattgaaag-atgatgatggtg-gtgacagCCAACATCCATTGTGAGCTATAACCATCTGGGAAACAACGATGGCATGAATCTGTCTGCTCCTCAAACCTTCCGCTCCAAGGAGATCTCCAAGAGCAATG

upper sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 3
lower sequence: PP1S267_10V6.1 (Physcomitrella patens), 3'ss of exon 6
----------gattttttgtatgcttaaacttta--attaaaataaaattgaagaacgtgttggggagaagtacattg-atgatgttttaattgtctgggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG
              | | || || || |     |  ||     |    || ||     |  |  ||      ||  || ||  |||| | | | ||||  | ||     |||||| || || || ||||| ||||| ||| |||| ||||| |||||||||||  | ||||| ||||| ||||| || || ||||| |||||||| |||||||
gtgattcctaagcatctcgtttggttcactggaagtatccggttctctttaaatcgttttctatggtttgtcacgatgtatcctgttctgaatctctgaattattgtgcacagCCCACCTCAATTGTGAGCTACAATCATTTGGGAAACAACGATGGCATGAACTTGTCAGCACCTCAGACCTTTCGTTCCAAGGAGATCTCCAAAAGCAATG

upper sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 3
lower sequence: PP1S55_204V6.1 (Physcomitrella patens), 3'ss of exon 5
----------------------------------------------------------------------gattttttgtatgcttaaactttaattaaaataaaattgaagaacgtgttggggagaagtacattgat-------gatgtttta-attg---tctgggtgatgagtg---acagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG
                                                                       || | |  | |  ||  | |    |     || || |||||    || |  |   |  |  | ||||        | | |||  | ||    |    |  |  |||   ||||||||| || || || || ||||||||| |||||||||| ||||| |||||  | || ||||||||||| ||||| || ||||| ||||||||||||||||
gtgagccaagtgcaatgtgtagaggaataaatgtaataaagccttctaacttgcgctgaatccaacttagaatgtctattttttttggattcaggtgtgtctagaactgaagtttatgctttgcgaagctggaatgattgctatgaaagctttgcactgaacccacaattgttggtgtgcacagCCAACGTCAATTGTTAGCTACAACCATTTGGGCAACAACGATGGAATGAACTTGTCCGCCCCTCAAACATTCCGTTCCAAGGAGATCTCCAAGAGCAATG

upper sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 3
lower sequence: EFJ27629 (Selaginella moellendorffii), 3'ss of exon 6
gattttttgtatgcttaaactttaattaaaataaaattgaagaacgtgttggggagaagtacattgatgatgttttaattgtctgggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG
                                    |  ||   ||| ||        |||  ||   ||   |  |   ||||      ||  |  |||||||| || || || || ||||| ||||| || ||||||||||| |||||||| || || |||||||| ||| | || ||||||||||||||||||||||
-----------------------------------gtaaaatctcgtttttc----tcgtatttttccgactctaaatccgtct------tgtcttccagCCAACCTCCATTGTCAGCTACAATCATCTTGGTAACAATGATGGAATGAATCTATCTGCGCCTCAAACATTCAGATCCAAGGAAATCTCCAAGAGCAATG

upper sequence: GLYMA05G31450.4 (Glycine max), 3'ss of exon 3
lower sequence: EFJ37320 (Selaginella moellendorffii), 3'ss of exon 6
gattttttgtatgcttaaactttaattaaaataaaattgaagaacgtgttggggagaagtacattgatgatgttttaattgtctgggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG
                                    |  ||   ||| ||        |||  ||   ||   |  |   ||||      ||  |  |||||||| || || || || ||||| ||||| || ||||||||||| |||||||| || || || ||||| ||| | || ||||||||||||||||||||||
-----------------------------------gtaaaatctcgtttttc----tcgtatttttccgactctaaatccgtct------tgtcttccagCCAACCTCCATTGTCAGCTACAATCATCTTGGTAACAATGATGGAATGAATCTATCTGCGCCGCAAACATTCAGATCCAAGGAAATCTCCAAGAGCAATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10847107|gb|BF069873.1|BF069873
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|193545668|gb|FK500815.1|FK500815
EST:     CAAAATGAAATCTGTGTTGGTGGATTTCCTTGGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CAAAATGAAATCTGTGTTGGTGGATTTCCTTG-TGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|193524006|gb|FK481051.1|FK481051
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|208272715|gb|GE066221.1|GE066221
EST:     GGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: GGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|207711491|gb|GD693645.1|GD693645
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|208277201|gb|GE077876.1|GE077876
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|22525230|gb|BU084041.1|BU084041
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|15285656|gb|BI469547.1|BI469547
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCT
EST: gi|27424631|gb|CA936151.1|CA936151
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|7283317|gb|AW595925.1|AW595925
EST:     TGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: TGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|207810457|gb|GD781147.1|GD781147
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|193598415|gb|FK553671.1|FK553671
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCA
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCA
EST: gi|208050824|gb|GD848049.1|GD848049
EST:     CCAAAATGAAATCTGTGTTGGTTGATTTTCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|193485468|gb|FK452551.1|FK452551
EST:     AAATACTGTGTTGGTTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: AAAT-CTGTGTTGG-TGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|9259990|gb|BE348137.1|BE348137
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|192305229|gb|FG997523.1|FG997523
EST:     CAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|193328454|gb|FK293914.1|FK293914
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAGCCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|17021564|gb|BM092598.1|BM092598
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|208055212|gb|GD853173.1|GD853173
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCAT
EST: gi|207818649|gb|GD791968.1|GD791968
EST:     CCAAAATGAAATCTGTGTTGGTGGNTTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|208290678|gb|GE082350.1|GE082350
EST:     GGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: GGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|120492865|gb|EH221032.1|EH221032
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|15285651|gb|BI469542.1|BI469542
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|193403549|gb|FK366919.1|FK366919
EST:     AATCTGTGTTGGTTGGTATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: AATCTGTGTTGG-TGG-ATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|192301388|gb|FG994712.1|FG994712
EST:     CCAAAATGAAATCTGTGTTGGTGGATTCCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|20812941|gb|BQ297419.1|BQ297419
EST:     AATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: AATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|193614156|gb|FK565894.1|FK565894
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAA
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAA
EST: gi|193564976|gb|FK520133.1|FK520133
EST:     CAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGACAAACAATGATGG
genomic: CAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGG-CCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGG-CAA-CAATGATGG
EST: gi|15287101|gb|BI470992.1|BI470992
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGTATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|9986213|gb|BE660321.1|BE660321
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|15203303|gb|BI426071.1|BI426071
EST:     CCATAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|193396085|gb|FK361840.1|FK361840
EST:     GGCCGGGATCAAG                         T
genomic: GGCCGGCATCAAGgtacaacttt ... tgagtgacag-
EST: gi|193396085|gb|FK361840.1|FK361840
EST:     GGCCGGGATCAAG                         T
genomic: GGCCGGCATCAAGgtacaacttt ... tgagtgacag-
EST: gi|9204909|gb|BE331133.1|BE331133
EST:     CCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|208216053|gb|GE008961.1|GE008961
EST:     GGCCGGCATCAAG                         T
genomic: GGCCGGCATCAAGgtacaacttt ... tgagtgacag-
EST: gi|208216053|gb|GE008961.1|GE008961
EST:     GGCCGGCATCAAG                         T
genomic: GGCCGGCATCAAGgtacaacttt ... tgagtgacag-
EST: gi|10232271|gb|BE801159.1|BE801159
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|120529530|gb|EH257664.1|EH257664
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAAGCATCTGGGCAACAATGAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGAT
EST: gi|193396894|gb|FK365028.1|FK365028
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATTCTTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGA
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACA-TC-TATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGA
EST: gi|8670153|gb|BE191260.1|BE191260
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|10231165|gb|BE800112.1|BE800112
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|13312611|gb|BG406262.1|BG406262
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|192300396|gb|FG987883.1|FG987883
EST:     GTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: GTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|27425475|gb|CA936995.1|CA936995
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|193373114|gb|FK335098.1|FK335098
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAGCCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|9204872|gb|BE331096.1|BE331096
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTTGAGT-ACAACCATCTGGGCAACAATGATGGCATGAA
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGT-GAGTTACAACCATCTGGGCAACAATGATGGCATGAA
EST: gi|208096888|gb|GD896725.1|GD896725
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|14008873|gb|BG725477.1|BG725477
EST:     GGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: GGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|7028502|gb|AW458285.1|AW458285
EST:     CCAAAATGAAATCTGTGTTGGTGGAATTNCTTGTGGGGGCCAGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCT
EST: gi|15203180|gb|BI425948.1|BI425948
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|20498701|gb|BQ273631.1|BQ273631
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|6913694|gb|AW395224.1|AW395224
EST:     CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: CCAAAATGAAATCTGTGTTGGTGGATTTCCTTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
EST: gi|207833383|gb|GD804514.1|GD804514
EST:     TTGTGGGGGCCGGCATCAAG                         CCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT
genomic: TTGTGGGGGCCGGCATCAAGgtacaacttt ... tgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttggggagaagtacattgatgatgttttaattgtctgggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG
                           ttttaat  putative branch site (score: 3)
                     atgatgttttaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gattttttgtatgcttaaactttaattaaaataaaattgaagaacgtgttggggagaagtacattgatgatgttttaattgtctgggtgatgagtgacagCCAACATCTATAGTGAGTTACAACCATCTGGGCAACAATGATGGCATGAATCTCTCAGCCCCTCAAACCTTCCGCTCTAAGGAAATCTCCAAGAGCAATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - gtatgct
- - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - gaagaac
- - - - - - - - - - - - - - - - - - - - - - - tgttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtga