Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggacatgagtgacatgttgaaaacatataattactattaaattaattatacttactttttgaaccatgccataaacacgagtcttaattaatttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCAGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA

Basic information

species Glycine max
transcript GLYMA05G31450.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31450.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g09250.2 (Oryza sativa), 3'ss of exon 3
------ggaca-tgagtgacatgttgaaaacatata---attactattaaattaattatacttactttttgaaccatgccataaacacgagtcttaattaatttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCAGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA
      ||||| ||| |||  ||||||| ||||  |   ||   | | | |||      || |  ||||    || |    | |    |  | | ||  || ||   ||||| |||||||||||  ||||||| ||||| ||||| || || ||| |||||||||| ||||| ||| ||||||| |||||  |||| || || |||||||
atctttggacaatgattgatctgttgaatacatccacaaatagttttcagatttgcagaacctgttttt----ccgttttctga---tggttatgaaaaaaatt---cagGTGAACCCTGATGACCTTGTGTTCGGGGGCTGGGACATTAGCAACATGAACCTGGCTGATGCTATGACCAGGGCAAAGGTACTTGACATTGATCTGCAGA

upper sequence: GLYMA05G31450.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G004528_T03 (Zea mays), 3'ss of exon 3
-ggacatgagtgacatgttgaaaacatataattactattaaattaattatacttactttttgaaccatgccataaacacgagtcttaattaatt------tatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCAGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA
 || ||  | ||||| |  |        ||| |  |  |||||     |     ||||||     | ||   | |  || |   | || || |       | | ||||| ||||| || ||  |||||||||| || ||||| ||||| | | |||||||||||||||||||| |||||||||||||| | || || ||||||||||
tgggcagtactgaca-gacggtggtgc-taactggttgtaaatcctcaa-----acttttgaggtcttgttttcatgaccaagttgaactattgaactggttttcagGTGAACCCAGACGACCTTGTGTTTGGAGGCTGGGACATCAGCAGCATGAACCTGGCAGATGCCATGACCAGGGCCAAGGTGCTGGACATTGACCTGCAGA

upper sequence: GLYMA05G31450.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G392513_T02 (Zea mays), 3'ss of exon 1
-ggacatgagtgacatgttgaaaacatataattactattaaattaattatacttactttttgaaccatgccataaacacgagtcttaattaatt------tatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCAGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA
 || ||  | |||| ||  |        ||| |  |  |||||     |     ||||||     | ||   | |  || |   | || || |       | | ||||| ||| |||| ||  |||||||||| || ||||| ||||| | | ||||| |||||||||||||| |||||||||||||| | || || ||||| ||||
tgggcagtactgac-tgacggtggtgc-taactggttgtaaatcctcaa-----acttttgaggtcttgttttcatgaccaagttgaactattgaactggttttcagGTGAACACTGACGACCTTGTGTTTGGAGGCTGGGACATCAGCATCATGAACTTGGCAGATGCCATGACCAGGGCCAAGGTGCTGGACATTGACCTACAGA

upper sequence: GLYMA05G31450.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G155242_T01 (Zea mays), 3'ss of exon 3
ggacatgagtgacatgttgaaaacata--taattactattaaattaattatacttactttttgaa----ccatgccataaacacgagtcttaattaatttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCAGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA
  |||   |||   | ||||  |      ||| |  |   | |||    | |||   | ||||       | |  ||| | || | || | || |  |||   ||||| ||||| || ||  ||||||| || || ||||| || || ||| |||||||||| ||  ||||| |||||||||||||| | ||||| ||||||||||
--acactcgtgcagtattgacgatggtgctaactggttgcagattcgc-agactcggtgtttgttatcttcttttcatgaccaagtgt-tgaactggtttt--cagGTGAACCCAGACGACATTGTGTTCGGAGGCTGGGACATTAGCAACATGAACCTGGCCGACTCCATGACCAGGGCCAAGGTGCTGGATATTGACCTGCAGA

upper sequence: GLYMA05G31450.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G177461_T01 (Zea mays), 3'ss of exon 3
ggacatgagtgacatgttgaaaacatataattactattaaatta--attatacttactttttgaaccatgccataaacacga-gtcttaattaatttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCAGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA
    |  | |  ||  || ||    |      |||| || | ||   | ||||  | ||  |      | |  ||    |   || ||  || | | |||||||| |||||  |   | | || ||||| || ||||| ||||||||| ||||| |||| || ||||||||||||||| ||||  | || ||  |||| ||||
---aaaaactatcagttttaatttgttgcgacactagtacactactgtgatacccagttagttctttcttcagtagtggcattgtattgcttgaatcatgcagGTTAACCCCAACACTATCGTCTTTGGTGGGTGGGACATCAGTAACCTGAACATGGCCGACGCCATGGCCAGGGCCCAGGTCCTAGACATTCACCTTCAGA

upper sequence: GLYMA05G31450.2 (Glycine max), 3'ss of exon 3
lower sequence: AT4G39800.1 (Arabidopsis thaliana), 3'ss of exon 3
ggacatgagtgacatgttgaaaacatataattactattaaattaattatacttactttttgaaccatgccataaacacgag-tcttaatt----aatttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCAGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA
     |  ||||   | |   | | | |||  || | |   | |   |   || ||| || ||   ||   |||    | | || |  |     |||  |  ||||| || || ||||||||||||||||| ||||||||||| ||| || ||||| | |||||||||||||| || |||| |||  ||||||||||| ||||||
----gttggtgattagct---agcttttaa--acaaatttttgagacaggttttcttcttaaagtgtgttttaattttgggatcgttgtgtggaaataaaaacagGTGAATCCGGATGATGTTGTGTTTGGAGGATGGGATATAAGTGACATGAACTTAGCAGATGCCATGGCTAGAGCCAGGGTTCTTGATATCGACTTGCAGA

upper sequence: GLYMA05G31450.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv07s0031g00920.t01 (Vitis vinifera), 3'ss of exon 3
ggacatgagtgacatg------ttgaaaacatataattactattaaattaattatacttactttttgaaccatgccataaacacgagtcttaattaatttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCAGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA
| |  | ||| ||         ||||||| || |   |  | |  ||   |||||      | |||  |  |||  ||||       | |  ||||   |   ||||| ||||| |||||  |||| |||||||||||||| |||||| || |||||||||||||||| ||||||||||| |||||  | || || || |||||||
gtaagttagtaactcaatttcattgaaaatatttgcatg-tgtggaaagcattatttgatttatttatagtatgatataa-------tttatattataatgatcagGTGAACCCAGATGACATTGTTTTTGGGGGATGGGACATCAGTGACATGAACCTGGCAGATGCAATGGCCAGGGCTAAGGTCCTGGACATTGATCTGCAGA

upper sequence: GLYMA05G31450.2 (Glycine max), 3'ss of exon 3
lower sequence: EFJ37320 (Selaginella moellendorffii), 3'ss of exon 3
ggacatgagtgacatgttgaaaacatataattactattaaattaattatacttactttttgaaccatgccataaacacgagtcttaattaatttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCAGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA
                              | ||||  ||   ||| | |  |  || ||||    ||          |  ||||   | | ||  |||||| || || || ||||||||  ||||||||||||||||||  ||| ||||||| |||||||||||||   | || || || || || || ||||| ||||
-----------------------------gtaactaacaa--caatcaaagatggttcttgagttttg----------gtttcttgtatcactt--gcagGTGAATCCCGACGATGTTGTTCTTGGGGGATGGGATATCAACAACATGAACCTCGCAGATGCCATGGAGCGAGCGAAAGTTTTGGACATGGACCTCCAGA

upper sequence: GLYMA05G31450.2 (Glycine max), 3'ss of exon 3
lower sequence: EFJ27629 (Selaginella moellendorffii), 3'ss of exon 3
ggacatgagtgacatgttgaaaacatataattactattaaattaattatacttactttttgaaccatgccataaacacgagtcttaattaatttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCAGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA
                              | ||||  ||   ||| | |  |  || ||||    ||          |  ||||   | | ||  |||||| || ||||| ||||||||  ||||||||||||||||||  ||| ||||||| |||||||||||||   | || || || || || || ||||| ||||
-----------------------------gtaactaacaa--caatcaaagatggttcttgagttttg----------gtttcttgtatcactt--gcagGTGAATCCTGACGATGTTGTTCTTGGGGGATGGGATATCAACAACATGAACCTCGCAGATGCCATGGAGCGAGCGAAAGTTTTGGACATGGACCTCCAGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533337|gb|EH261470.1|EH261470
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|19346456|gb|BM891336.1|BM891336
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|207845053|gb|GD817534.1|GD817534
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATA
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATA
EST: gi|208159306|gb|GD954257.1|GD954257
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAA
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAA
EST: gi|193728938|gb|FK665620.1|FK665620
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|193514317|gb|FK470633.1|FK470633
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGA
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGA
EST: gi|15285158|gb|BI469049.1|BI469049
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|20813012|gb|BQ297490.1|BQ297490
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|193355266|gb|FK320887.1|FK320887
EST:     AGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAATAACTTGAAC
genomic: AGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|213588844|gb|DB967938.1|DB967938
EST:     CTTTCCAAGGNGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|17021895|gb|BM092929.1|BM092929
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|20814880|gb|BQ299358.1|BQ299358
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|193718097|gb|FK653829.1|FK653829
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|193334748|gb|FK300568.1|FK300568
EST:     ATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GCAAGCCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: ATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|208327147|gb|GE122369.1|GE122369
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCCGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|207844116|gb|GD815211.1|GD815211
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGT
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGT
EST: gi|120533531|gb|EH261664.1|EH261664
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|120529472|gb|EH257606.1|EH257606
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTCTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|15338188|gb|BI498852.1|BI498852
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|208161439|gb|GD963893.1|GD963893
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGT
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGT
EST: gi|22540793|gb|BU090627.1|BU090627
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGCGTTTGGGGGATGGCATATCAGT
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGT
EST: gi|20813560|gb|BQ298038.1|BQ298038
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|120495837|gb|EH224004.1|EH224004
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTATGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|9986211|gb|BE660319.1|BE660319
EST:     AGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: AGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|9258023|gb|BE346146.1|BE346146
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|208093937|gb|GD896154.1|GD896154
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGG
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGG
EST: gi|208192854|gb|GD989247.1|GD989247
EST:     TTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAACG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGA
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGA
EST: gi|10237426|gb|BE806314.1|BE806314
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTT-GGGGGATGGGATATCAGTAACTTGAAC
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|14259658|gb|BG882566.1|BG882566
EST:     CAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
genomic: CAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAAC
EST: gi|208084212|gb|GD880466.1|GD880466
EST:     CTTTCCAAGGGGAGGAAATATATGCCCCATTCAAGAGCCTGCTTCCAATG                         GTAAACCCTGATGATGTTGTGTTTGGGGGA
genomic: CTTTCCAAGGGGAGGTTATATATGCCCCATTCAAGAGCCTGCTTCCAATGgtatactacc ... atttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatacttactttttgaaccatgccataaacacgagtcttaattaatttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCAGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA
                                  agtcttaattaattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggacatgagtgacatgttgaaaacatataattactattaaattaattatacttactttttgaaccatgccataaacacgagtcttaattaatttatgcagGTAAACCCTGATGATGTTGTGTTTGGGGGATGGGATATCAGTAACTTGAACCTGGCAGATGCCATGGCCAGGGCCAAGGTGTTTGATATCGACCTGCAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG