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...cttatgtatgagattatatagactgtggtgatttctattgctgtgcttctgatgtttcttacttaatgaatggcatatggactttttccactgttaaaagTTCTCCAAGATGGCAAGGTATGACATGACTGGTGTTGGAATAAACCTTAAGGAAGTTCCTGATGAAAATGGAGACCTCAGACTGGAGGTTCTGGGAATTA
species | Glycine max |
transcript | GLYMA05G29820.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTCTCCAACTTGGCCGATCCTTATACTCGCTTTCTCTCCCCTGATGAG TTCTCCAAGATGGCAAGGTATGACATGACEST: gi|120533174|gb|EH261307.1|EH261307
genomic: TGCTCTCCAGCTTGGCCGATCCTTATACTCGCTTTCTCTCCCCTGATGAGgtcatttttc ... ctgttaaaagTTCTCCAAGATGGCAAGGTATGACATGAC
EST: TGCTCTCCAGCTTGGCCGATCCTTATACTCGCTTTCTCTCCCCTGATGAG TTCTCCAAGATGGCAAGGTATGACATGACTGGTGTTGGAATAAACCTTAAGEST: gi|9258053|gb|BE346200.1|BE346200
genomic: TGCTCTCCAGCTTGGCCGATCCTTATACTCGCTTTCTCTCCCCTGATGAGgtcatttttc ... ctgttaaaagTTCTCCAAGATGGCAAGGTATGACATGACTGGTGTTGGAATAAACCTTAAG
EST: TGCTCTCCAGCTTGGCCGATCCTTATACTCGCTTTCTCTCCCCTGATGAG TTCTCCAAGATGGCAAGGTATGACATGACTGGTGTTGGAATAAACCTTAAGEST: gi|20811748|gb|BQ296226.1|BQ296226
genomic: TGCTCTCCAGCTTGGCCGATCCTTATACTCGCTTTCTCTCCCCTGATGAGgtcatttttc ... ctgttaaaagTTCTCCAAGATGGCAAGGTATGACATGACTGGTGTTGGAATAAACCTTAAG
EST: TGCTCTCCAGCTTGGCCGATCCTTATACTCGCTTTCTCTCCCCTGATGAG TTCTCCAAGATGGCAAGGTATGACATGACTGGTGTTGGAATAAACCTTAAGEST: gi|120532592|gb|EH260725.1|EH260725
genomic: TGCTCTCCAGCTTGGCCGATCCTTATACTCGCTTTCTCTCCCCTGATGAGgtcatttttc ... ctgttaaaagTTCTCCAAGATGGCAAGGTATGACATGACTGGTGTTGGAATAAACCTTAAG
EST: TGCTCTCCAGCTTGGCCGATCCTTATACTCGCTTTCTCTCCCCTGATGAG TTCCCCAAGATGGCAAGGTATGACATGACTGGTGTTGGAATAAACCTTAAG
genomic: TGCTCTCCAGCTTGGCCGATCCTTATACTCGCTTTCTCTCCCCTGATGAGgtcatttttc ... ctgttaaaagTTCTCCAAGATGGCAAGGTATGACATGACTGGTGTTGGAATAAACCTTAAG
cttctgatgtttcttacttaatgaatggcatatggactttttccactgttaaaagTTCTCCAAGATGGCAAGGTATGACATGACTGGTGTTGGAATAAACCTTAAGGAAGTTCCTGATGAAAATGGAGACCTCAGACTGGAGGTTCTGGGAATTA
ctttttccactgtt CT-rich tract
ttacttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttatgtatgagattatatagactgtggtgatttctattgctgtgcttctgatgtttcttacttaatgaatggcatatggactttttccactgttaaaagTTCTCCAAGATGGCAAGGTATGACATGACTGGTGTTGGAATAAACCTTAAGGAAGTTCCTGATGAAAATGGAGACCTCAGACTGGAGGTTCTGGGAATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - tgtatga
- - - - - - - - - - - -tgtggtg
- - - - - - - - - - - - - - - - - - attgctg
- - - - - - - - - - - - - - - - - - - - - -tgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatatg