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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaaattagcttttgtttcttttttcctgcaaattcagtttaccttgacaagtcttgatagcatgtgtccaggaatgagaagcacctgcaagttttgtttattgacttatgatttgattaaatcctcataaacaatacccatggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTGACAACATATTATCTAAGGCTGCATCAGTATATGGTGATGCCCGCAAGCA

Basic information

species Glycine max
transcript GLYMA05G29700.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193730742|gb|FK663112.1|FK663112
EST:     TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|193513257|gb|FK470021.1|FK470021
EST:     AAGCTAGTCAAAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: AAGC-AG-CAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|193396156|gb|FK361911.1|FK361911
EST:     TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|151393188|gb|EV263063.1|EV263063
EST:     TAAAGTAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|209698264|gb|BW667553.1|BW667553
EST:     TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|151413137|gb|EV282945.1|EV282945
EST:     TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|193705968|gb|FK648392.1|FK648392
EST:     TAAAGCAGCAAAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|208122422|gb|GD920887.1|GD920887
EST:     TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|208048537|gb|GD847496.1|GD847496
EST:     AAAGCTAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: AAAGC-AGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|208306413|gb|GE109994.1|GE109994
EST:     TAAAGCAGCAGAAACATGTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|193686261|gb|FK625948.1|FK625948
EST:     TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|193515808|gb|FK475148.1|FK475148
EST:     TAAAGCAGCAAAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|193700820|gb|FK636807.1|FK636807
EST:     TAAAGCAGCAAAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|193721240|gb|FK659922.1|FK659922
EST:     TAAAGTAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|208203101|gb|GD997533.1|GD997533
EST:     TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAAATAATAGGAGCAGAGAACAACA
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGT-AAAT-AT-GGAGCAGAGAACAACA
EST: gi|208274115|gb|GE071065.1|GE071065
EST:     TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
EST: gi|208181147|gb|GD980186.1|GD980186
EST:     TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAG                         GAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG
genomic: TAAAGCAGCAGAAACATTTACAGCTATAGGTTATAAGCATATTGAAACAGgtgaaaatta ... tggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttattgacttatgatttgattaaatcctcataaacaatacccatggtagacagGAACGAAACTTTCTGAGGATTGCTGTAAATATGGAGCAGAGAACAACAGTGACAACATATTATCTAAGGCTGCATCAGTATATGGTGATGCCCGCAAGCA
          ttatgatttgattaaa  TA-rich tract