1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ccatagaaagatattttttaaaaacaatatctcaagtcattttcattaaagtatgcacattctaataagtaagcaaaaacgattttattgggtgcttcagATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTCATTCAAAAGGCAGGAATGGAGCACAAAATTGACTTTATCCTTGGTGATG
species | Glycine max |
transcript | GLYMA05G27960.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAG ATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTCEST: gi|120494335|gb|EH222502.1|EH222502
genomic: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAGgtaccatatc ... ggtgcttcagATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTC
EST: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAG ATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTCEST: gi|120496380|gb|EH224547.1|EH224547
genomic: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAGgtaccatatc ... ggtgcttcagATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTC
EST: ATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAG ATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTCEST: gi|23057239|gb|BU577914.1|BU577914
genomic: ATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAGgtaccatatc ... ggtgcttcagATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTC
EST: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAG ATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTCEST: gi|23064307|gb|BU579089.1|BU579089
genomic: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAGgtaccatatc ... ggtgcttcagATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTC
EST: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAG ATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTCEST: gi|22934232|gb|BU551371.1|BU551371
genomic: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAGgtaccatatc ... ggtgcttcagATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTC
EST: GCCTCATGATGGCAAG ATNNNAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTCEST: gi|120496499|gb|EH224666.1|EH224666
genomic: GCCTCATGATGGCAAGgtaccatatc ... ggtgcttcagATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTC
EST: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAG ATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTCEST: gi|13479213|gb|BG508556.1|BG508556
genomic: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAGgtaccatatc ... ggtgcttcagATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTC
EST: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAG ATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTCEST: gi|151403065|gb|EV272875.1|EV272875
genomic: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAGgtaccatatc ... ggtgcttcagATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTC
EST: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAG ATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTCEST: gi|15000285|gb|BI321099.1|BI321099
genomic: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAGgtaccatatc ... ggtgcttcagATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTC
EST: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAG ATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTCEST: gi|23064557|gb|BU579330.1|BU579330
genomic: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAGgtaccatatc ... ggtgcttcagATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTC
EST: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAG ATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTCEST: gi|120529047|gb|EH257181.1|EH257181
genomic: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAGgtaccatatc ... ggtgcttcagATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTC
EST: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAG ATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTCEST: gi|17962915|gb|BM269671.1|BM269671
genomic: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAGgtaccatatc ... ggtgcttcagATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTC
EST: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAG ATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTCEST: gi|120494453|gb|EH222620.1|EH222620
genomic: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAGgtaccatatc ... ggtgcttcagATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTC
EST: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAG ATAACAGCAATTGATGTAAATAGATAAACATACGAGATTGGATTGCCATTCEST: gi|120496135|gb|EH224302.1|EH224302
genomic: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAGgtaccatatc ... ggtgcttcagATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTC
EST: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAG ATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTC
genomic: CTGGCTATTCTCTTCTTGCCACAGCTCTTGCTCTGCCTCATGATGGCAAGgtaccatatc ... ggtgcttcagATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTC
ttaaagtatgcacattctaataagtaagcaaaaacgattttattgggtgcttcagATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTCATTCAAAAGGCAGGAATGGAGCACAAAATTGACTTTATCCTTGGTGATG
ttctaat putative branch site (score: 2)
aaaaacgattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatagaaagatattttttaaaaacaatatctcaagtcattttcattaaagtatgcacattctaataagtaagcaaaaacgattttattgggtgcttcagATAACAGCAATTGATGTAAATAGAAAAACATACGAGATTGGATTGCCATTCATTCAAAAGGCAGGAATGGAGCACAAAATTGACTTTATCCTTGGTGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - aaaacaa
- - - - - - - - - - - - - - - - caagtca
- - - - - - - - - - - - - - - - - - - - - - - - - gtatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaaac