1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgcgcgaatctttgactctcaaaaagcaccttttattttagttattccaccctaaaaaataaaatgctatatttgtggctgcctttatttattattccttactgttttttggggttaaatatcgtactttagCCGTTATCCTTCCATCCCTCGAGCGGCTTCATGGTAGCTTGGAGAAGTTGAACATTTGTAAGAAAGGTCATTCTAGCATAGATGGCTCAAGTTTTGGCAA
species | Glycine max |
transcript | GLYMA05G27640.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCAAATATGACTTCTCATGGAAGGAAAGCAAGCATCCGGGACTTTTATG CCGTTATCCTTCCATCCCTCGAGCGGCTTCATGGTAGCTTGGAGAAGTTGAEST: gi|254347420|gb|GR853669.1|GR853669
genomic: ATCAAATATGACTTCTCATGGAAGGAAAGCAAGCATCCGGGACTTTTATGgtgcgcgaat ... cgtactttagCCGTTATCCTTCCATCCCTCGAGCGGCTTCATGGTAGCTTGGAGAAGTTGA
EST: ATCAAATATGACTTCTCATGGAAGGAAAGCAAGCATCCGGGACTTTTATG CCGTTATCCTTCCATCCCTCGAGCGGCTTCATGGTAGCTTGGAGAAGTTGAEST: gi|192304134|gb|FG995350.1|FG995350
genomic: ATCAAATATGACTTCTCATGGAAGGAAAGCAAGCATCCGGGACTTTTATGgtgcgcgaat ... cgtactttagCCGTTATCCTTCCATCCCTCGAGCGGCTTCATGGTAGCTTGGAGAAGTTGA
EST: ATCAAATATGACTTCTCATGGAAGGAAAGCAAGCATCCGGGACTTTTATG CCGTTATCCTTCCATCCCTCGAGCGGCTTCATGGTAGCTTGGAGAAGTTGA
genomic: ATCAAATATGACTTCTCATGGAAGGAAAGCAAGCATCCGGGACTTTTATGgtgcgcgaat ... cgtactttagCCGTTATCCTTCCATCCCTCGAGCGGCTTCATGGTAGCTTGGAGAAGTTGA
gctgcctttatttattattccttactgttttttggggttaaatatcgtactttagCCGTTATCCTTCCATCCCTCGAGCGGCTTCATGGTAGCTTGGAGAAGTTGAACATTTGTAAGAAAGGTCATTCTAGCATAGATGGCTCAAGTTTTGGCAA
tccttac putative branch site (score: 2)
tttatttattattcct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcgaatctttgactctcaaaaagcaccttttattttagttattccaccctaaaaaataaaatgctatatttgtggctgcctttatttattattccttactgttttttggggttaaatatcgtactttagCCGTTATCCTTCCATCCCTCGAGCGGCTTCATGGTAGCTTGGAGAAGTTGAACATTTGTAAGAAAGGTCATTCTAGCATAGATGGCTCAAGTTTTGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA