1 5' 3' | 2 5' 3' | 3 5' 3' |
...agttgctaaaatttttttttttgtttgctattggcagcactgattgtgtgagttatgaccaatgatgatggaaataaccatatatgcattttatttttagGCATGAACTTCTCCTTTTTGAGGCCCTACGTGAAGGTTTGGAAGAAGAAATGGAGAGGGATCCTTGTGTATGTGTCATGGGCGAAGATGTAGGTCACTAT
species | Glycine max |
transcript | GLYMA05G27260.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACAAAGGAAGGCAGTTCTGCGGCTTCTACATCAAAATCTGG GCATGAACTTCTCCTTTTTGAGGCCCTACGTGAAGGTTTGGAAGAAGAAATEST: gi|192321464|gb|FK012856.1|FK012856
genomic: ACAAAGGAAGGCAGTTCTGCGGCTTCTACATCAAAATCTGGgtatgtctct ... ttatttttagGCATGAACTTCTCCTTTTTGAGGCCCTACGTGAAGGTTTGGAAGAAGAAAT
EST: ACAAAGGAAGGCAGTTCTGCGGCTTCTACATCAAAATCTGG GCATGAACTTCTCCTTTTTGAGGCCCTACGTGAAGGTTTGGAAGAAGAAAT
genomic: ACAAAGGAAGGCAGTTCTGCGGCTTCTACATCAAAATCTGGgtatgtctct ... ttatttttagGCATGAACTTCTCCTTTTTGAGGCCCTACGTGAAGGTTTGGAAGAAGAAAT
gtgtgagttatgaccaatgatgatggaaataaccatatatgcattttatttttagGCATGAACTTCTCCTTTTTGAGGCCCTACGTGAAGGTTTGGAAGAAGAAATGGAGAGGGATCCTTGTGTATGTGTCATGGGCGAAGATGTAGGTCACTAT
aaataac putative branch site (score: 2)
ttttattttt putative PPT
aaataaccatatatgc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttgctaaaatttttttttttgtttgctattggcagcactgattgtgtgagttatgaccaatgatgatggaaataaccatatatgcattttatttttagGCATGAACTTCTCCTTTTTGAGGCCCTACGTGAAGGTTTGGAAGAAGAAATGGAGAGGGATCCTTGTGTATGTGTCATGGGCGAAGATGTAGGTCACTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
-gttgcta
- - - - - - - - - - -tgtttgc
- - - - - - - - - - - - - - - - - - - - - - tgtgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcat