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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggaatgatttgtttcagctttttttatatatttttttttaacaattccttcataaattaaggcttattatcttatagctaatgctcagcttcgtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG

Basic information

species Glycine max
transcript GLYMA05G26630.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G26630.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os03g02850.1 (Oryza sativa), 3'ss of exon 3
----gtaggaatgatttgtttcagctttttttatatatttttttttaacaattccttcataaattaaggcttattatcttatagctaatgctcagcttcgtgtg--tgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG
    || ||   ||   ||||  | || | | |  | ||| |      |||||  ||   ||  |          |   ||    | ||||  | |    ||    ||||| |  | |||||| |  |  ||||  | ||  | ||||| ||||| ||||| ||||| ||||| || || ||||||||||||||||| || |||
gtttgtggggg-gaacagtttatgtttctctgacttgtttct-----gcaatttttttcgaaggtg--------caaagtaggaatgatgcgtaaccatatggcattgtagGTATTTCAACATGTGCTCATTGATTTTCCGGGGCTTGCATTCTTCACAACCTATGCTCTGTTAGTGCTCTTCTGGGCTGAGATTTACTATCAG

upper sequence: GLYMA05G26630.2 (Glycine max), 3'ss of exon 3
lower sequence: AT2G02180.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaggaatgatttgtttcagctttttttatatatttttttttaacaattccttcataaattaaggcttattatcttatagctaatgctcagcttcgtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG
             ||||  | |  ||    ||  || |  ||   |  |  || |    || |   |    | ||| ||   |||   |||  |  | | |||||||| | ||||||||||| ||||| || || |||||||||||||| || || ||||| ||  |||| || ||||||||||| |||||||| |||
-------------gtttaggatcattcaccatcattgtaattttaatcttattgacttgtttattgtgtcaaccttcta---aatttgcagtgttatctttgtagATTCTGCAACATATCTTGCTTGATATTCCAAGTCTTGCTTTCTTCACCACCTATGCTCTTCTGGTTCTTTTCTGGGCTGAAATTTATTATCAG

upper sequence: GLYMA05G26630.2 (Glycine max), 3'ss of exon 3
lower sequence: AT1G14530.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaggaatgatttgtttcagctttttttatatatttttttttaaca--attccttcataaattaaggcttattatcttatagctaatgctcagcttcgtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG
             ||||    ||| | |  ||||| |  |||| |   |||  |     | || |   || | | |||  |  ||  | || | ||  |   |||||||| | ||||||||||||||||| || || |||||||||||||| || || ||||| ||  |||| || || ||||| |||||||| ||||||
-------------gtttggtgtttctattgatattgtgatttagcctcattgatggtctatttgaaatttctaaacttgcaagtatcgttcggttt--ttcttgtagATTCTGCAACATATCTTACTTGATATTCCAAGTCTTGCTTTCTTCACTACATATGCGCTTCTGGTTCTCTTTTGGGCAGAGATTTACTACCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51334723|gb|CO978589.1|CO978589
EST:     TCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: TCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
EST: gi|213600472|gb|DB970324.1|DB970324
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
EST: gi|151402287|gb|EV272100.1|EV272100
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
EST: gi|254327807|gb|GR834772.1|GR834772
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
EST: gi|213593691|gb|DB971713.1|DB971713
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
EST: gi|209706563|gb|BW676111.1|BW676111
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
EST: gi|192324953|gb|FK015404.1|FK015404
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCATCATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
EST: gi|5606771|gb|AI900869.1|AI900869
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTT
EST: gi|26047656|gb|CA784373.1|CA784373
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
EST: gi|213602225|gb|DB958485.1|DB958485
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
EST: gi|151408492|gb|EV278300.1|EV278300
EST:     GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAG                         ATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT
genomic: GGTGTTTTGTTTTTGTCTTCCGTCGGGATGTGCAGAAGTTGCAGCCAGAGgtaggaatga ... gtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcataaattaaggcttattatcttatagctaatgctcagcttcgtgtgtgtagATTGTCCAACATATCTTACTTGACATGCCTAGTCTTGCTTTCTTTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG
                            agctaat  putative branch site (score: 3)
                ttattatcttata  TA-rich tract