Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtttgtgtcaatagtgtcgtgttctgaagtatttttggtcagtttgaaatcaagttgattctactctaggtttttgtatatcatgactttgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT

Basic information

species Glycine max
transcript GLYMA05G26580.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G26580.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os02g57854.1 (Oryza sativa), 3'ss of exon 3
tgtttgtgtcaatagtgtcgtgtt-ctgaagtatttttggtcagtttgaaatcaa-gttgattctactctaggtttttgtatatcatgactttgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT
  |   |||  ||  | |  |||  |   | |   | |   |  | | |||| |    |   |  |||  |      ||  | | |  |       || |||||||||| ||||||||||| || |||||||| || ||||| || |||||||||||  |||||||||| || || |||||||||
--tccttgttgattatattatgtaaccatacttcctatatgctatgttaaattagtactccatagacttcataccaatgagttttaccatgacatgttacagAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATAT

upper sequence: GLYMA05G26580.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os04g05080.1 (Oryza sativa), 3'ss of exon 3
tgtttgtgtcaatagtgtcgtgttctgaagtatttttggtcagtttgaaatcaagttgattc---tactctaggtttttgtatatcatgactttgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT
  ||| ||| |    | | |  || |    | ||    | |    | |        |  | |    |||  |      || || | |          || |||||||||| |||||||||||||| ||||| || || || || || |||||||||||  |||||||||| || || || ||||||
--tttatgttacccttat-gcattttattatgttagcagacttcctaatgctttagtagtccatagacttcacacggctgaattttactctgacatgttacagAAACAACAGTCAAACAAATTGAAGATGCGTTTAAGGAGTTCACTACAAGGGAGGACATTGCAATTGTACTCATCAGTCAATAT

upper sequence: GLYMA05G26580.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G008232_T01 (Zea mays), 3'ss of exon 2
----tgtttgtgtcaatagtgtcgtgttctgaagtatttttggt-cagtttgaaatcaagttgattctactctaggtttttgtatatcatgactttgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT
      |     | | | |||  |  ||      ||  || | | | |||    |||  | || |||      |   |  ||| | |  |   ||       |||| || || || |||||||| |||||||| |||||||||||||| || ||||||||| |||| |||||||| || || || |||
ctgcaatccccattatttgtgctgcattacttcatacattagttactgttgttgatcctgatggttcattatcaa--tactgtttgttgt---ttcatgccacagAGACGACAGTTAAACAAATCGAGGATGCGTTCAAAGAATTTACTACGAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT

upper sequence: GLYMA05G26580.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G158766_T02 (Zea mays), 3'ss of exon 3
tgtttgtgtcaatagtgtcgtgttctgaagtatttttggtcagtttgaaatcaagttgattctact-ctaggtttttgtatatcatgactttgatttt-cagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT
  ||| |  ||    |   |      |    ||  ||| |   | |    |     |||| | |    |  || |   || |   ||  ||| |||   |||| || || || |||||||| ||||| || ||||||||||||||  ||||||||||| |||| |||||||| || || || |||
--tttatagcatgccttcagcaacagggttcatgcttgtttcctctactgttgcaatgatccaatggtttagtatgaatacagtttgttttttattccacagAGACGACAGTTAAACAAATCGAGGACGCGTTCAAAGAATTTACTGCAAGGGAGGATATTGCTATTGTGCTCATCAGTCAGTAT

upper sequence: GLYMA05G26580.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0062g00210.t01 (Vitis vinifera), 3'ss of exon 3
-tgtttgtgtcaatagtgtcgtgttctgaagtatttttggtcagtttgaaatcaagt--tgattctactctaggtttttgtatatcatgactttgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT
 ||  |  | |||   |   ||   || |  |||||  |       |||| |  |    || |  |    | || |  || |  ||||    ||  || | ||||||||| || ||||||||||| ||||||||||| ||||| || |||| ||| ||  |||| ||  |  | || |||||||||
gtgaattgggcaac--ttgtgtacccttatttatttcagtatctaatgaagtttatcaatggtcatttcattggctaatg-aggtcattttgttctttcttagAAACAACTGTAAAACAAATTGAAGATGCATTCAAGGAATTCACCACAAAGGAAGACATTGCTATCATTTTAATAAGCCAATAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15284995|gb|BI468886.1|BI468886
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|192325651|gb|FK019507.1|FK019507
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|298198469|gb|HO040008.1|HO040008
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|298168456|gb|HO009386.1|HO009386
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAGGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|192307401|gb|FK000757.1|FK000757
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|24135940|gb|BU926450.1|BU926450
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|15338076|gb|BI498732.1|BI498732
EST:     AAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: AAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|58016272|gb|CX703014.1|CX703014
EST:     ATTGTTGATTCAT                         AAACAACCGTTTAACAAATTGAGGATGCATTCAAGGAATTTACGACAAGGG
genomic: ATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|4293148|gb|AI442006.1|AI442006
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|10236403|gb|BE805291.1|BE805291
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|298190735|gb|HO032856.1|HO032856
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAATAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|19268945|gb|BM885201.1|BM885201
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|151396796|gb|EV266669.1|EV266669
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|192327761|gb|FK022054.1|FK022054
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|151406264|gb|EV276079.1|EV276079
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|193319552|gb|FK285115.1|FK285115
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTC-AACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|298188112|gb|HO032069.1|HO032069
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|151393484|gb|EV263359.1|EV263359
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|193324668|gb|FK290960.1|FK290960
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAGCAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|31473983|gb|CD416011.1|CD416011
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|15001194|gb|BI322008.1|BI322008
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|11690347|gb|BF598023.1|BF598023
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|10846200|gb|BF071276.1|BF071276
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|19938564|gb|BQ081779.1|BQ081779
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|10236371|gb|BE805259.1|BE805259
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|192304577|gb|FG997921.1|FG997921
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|27425725|gb|CA937245.1|CA937245
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|19936808|gb|BQ081021.1|BQ081021
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|298189101|gb|HO037504.1|HO037504
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAGTTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|192330260|gb|FK020560.1|FK020560
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|6567134|gb|AW234759.1|AW234759
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|151407210|gb|EV277025.1|EV277025
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|298169902|gb|HO018526.1|HO018526
EST:     GGGAAATGTTGGCATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|298168424|gb|HO009354.1|HO009354
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|254326696|gb|GR832848.1|GR832848
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|58022748|gb|CX709489.1|CX709489
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|26047652|gb|CA784370.1|CA784370
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|208286956|gb|GE082170.1|GE082170
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCACTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|298175222|gb|HO018103.1|HO018103
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|17402186|gb|BM178968.1|BM178968
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|192327760|gb|FK022053.1|FK022053
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|298196809|gb|HO041552.1|HO041552
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|19936335|gb|BQ080821.1|BQ080821
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|207750476|gb|GD725577.1|GD725577
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|298192173|gb|HO036255.1|HO036255
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|31459086|gb|CD401114.1|CD401114
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|7233260|gb|AW568608.1|AW568608
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|26047689|gb|CA784402.1|CA784402
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGTGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
EST: gi|254326697|gb|GR832849.1|GR832849
EST:     GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAA                         AAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG
genomic: GGGAAATGTTGACATACGTAGGAAGACAAATTACCTCATTGTGGATTCAAgtatgccact ... tgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaaatcaagttgattctactctaggtttttgtatatcatgactttgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT
                                          ctttgat  putative branch site (score: 5)
                                                ttttc  CT-rich tract
                          tttttgtatatcat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtttgtgtcaatagtgtcgtgttctgaagtatttttggtcagtttgaaatcaagttgattctactctaggtttttgtatatcatgactttgattttcagAAACAACCGTCAAACAAATTGAGGATGCATTCAAAGAATTTACAACAAGGGAGGATGTTGCAATTGTGCTGATTAGCCAATAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
tgtttgt
- - - - - - - -tgtcgtg
- - - - - - - - - - - - - - - - - - - - - - - -aaatcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgac