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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaattgtaaactcttacagatttcttggacatgcaaaaactctgctttattttccatgcttgagtataaagtccaattttaaaactttagGATTCAGGTGATCTTCGTAAGGAAAGTGGCCAGGATACTCTGAATCGCATTACAGAACTTGTCAATGATACTCTTGCTAGTGAAGGATCAAATAGCTTTT

Basic information

species Glycine max
transcript GLYMA05G26250.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398725|gb|EV268596.1|EV268596
EST:     TACTTGAGAGAGAACTTCCTTCTGAATCATTTTCATTAGTAGCTGAGGGG                         GATTCAGGTGATCTTCGTAAGGAAAGTGGCCAGGATACTCTGAATCGCATT
genomic: TACTTGAGAGAGAACTTCCTTCTGAATCATTTTCATTAGTAGCTGAGGAGgtgaaattgt ... aaaactttagGATTCAGGTGATCTTCGTAAGGAAAGTGGCCAGGATACTCTGAATCGCATT
EST: gi|15813517|gb|BI785792.1|BI785792
EST:     TACTTGAGAGAGAACTTCCTTCTGAATCATTTTCATTAGTAGCTGAGGAG                         GATTCAGGTGATCTTCGTAAGGAAAGTGGCCAGGATACTCTGAATCGCATT
genomic: TACTTGAGAGAGAACTTCCTTCTGAATCATTTTCATTAGTAGCTGAGGAGgtgaaattgt ... aaaactttagGATTCAGGTGATCTTCGTAAGGAAAGTGGCCAGGATACTCTGAATCGCATT
EST: gi|192294187|gb|FG986276.1|FG986276
EST:     TACTTGAGAGAGAACTTCCTTCTGAATCATTTTCATTAGTAGCTGAGGAG                         GATTCAGGTGATCTTCGTAAGGAAAGTGGCCAGGATACTCTGAATCGCATT
genomic: TACTTGAGAGAGAACTTCCTTCTGAATCATTTTCATTAGTAGCTGAGGAGgtgaaattgt ... aaaactttagGATTCAGGTGATCTTCGTAAGGAAAGTGGCCAGGATACTCTGAATCGCATT
EST: gi|192330285|gb|FK020570.1|FK020570
EST:     TACTTGAGAGAGAACTTCCTTCTGAATCATTTTCATTAGTAGCTGAGGAG                         GATTCAGGTGATCTTCGTAAGGAAAGTGGCCAGGATACTCTGAATCGCATT
genomic: TACTTGAGAGAGAACTTCCTTCTGAATCATTTTCATTAGTAGCTGAGGAGgtgaaattgt ... aaaactttagGATTCAGGTGATCTTCGTAAGGAAAGTGGCCAGGATACTCTGAATCGCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaactctgctttattttccatgcttgagtataaagtccaattttaaaactttagGATTCAGGTGATCTTCGTAAGGAAAGTGGCCAGGATACTCTGAATCGCATTACAGAACTTGTCAATGATACTCTTGCTAGTGAAGGATCAAATAGCTTTT
                                       aattttaaaacttta  TA-rich tract