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...taagtagtattcagtcttcattctttacggttaaatttcaaattgtctatcactctatctgtttggctgacttaagaatgtcccaaaactttaaatgcagGGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCA
species | Glycine max |
transcript | GLYMA05G26240.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGCCATTTCTGATGGCAAATTAGCTGTGTTGCTTTTATCTGGTGGCCAG GGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCAEST: gi|13480594|gb|BG509937.1|BG509937
genomic: AGGCCATTTCTGATGGCAAATTAGCTGTGTTGCTTTTATCTGGTGGCCAGgtatatttta ... ttaaatgcagGGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCA
EST: AGGCCATTTCTGATGGCAAATTAGCTGTGTTGCTTTTATCTGGTGGCCAG GGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCAEST: gi|254340891|gb|GR854619.1|GR854619
genomic: AGGCCATTTCTGATGGCAAATTAGCTGTGTTGCTTTTATCTGGTGGCCAGgtatatttta ... ttaaatgcagGGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCA
EST: AGGCCATTTCTGATGGCAAATTAGCTGTGTTGCTTTTATCTGGTGGCCAG GGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCAEST: gi|254346278|gb|GR859891.1|GR859891
genomic: AGGCCATTTCTGATGGCAAATTAGCTGTGTTGCTTTTATCTGGTGGCCAGgtatatttta ... ttaaatgcagGGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCA
EST: AGGCCATTTCTGATGGCAAATTAGCTGTGTTGCTTTTATCTGGTGGCCAG GGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCAEST: gi|213600098|gb|DB964304.1|DB964304
genomic: AGGCCATTTCTGATGGCAAATTAGCTGTGTTGCTTTTATCTGGTGGCCAGgtatatttta ... ttaaatgcagGGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCA
EST: AGGCCATTTCTGATGGCAAATTAGCTGTGTTGCTTTTATCTGGTGGCCAG GGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCAEST: gi|298168261|gb|HO014436.1|HO014436
genomic: AGGCCATTTCTGATGGCAAATTAGCTGTGTTGCTTTTATCTGGTGGCCAGgtatatttta ... ttaaatgcagGGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCA
EST: AGGCCATTTCTGATGGCAAATTAGCTGTGTTGCTTTTATCTGGTGGCCAG GGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCA
genomic: AGGCCATTTCTGATGGCAAATTAGCTGTGTTGCTTTTATCTGGTGGCCAGgtatatttta ... ttaaatgcagGGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCA
tctatcactctatctgtttggctgacttaagaatgtcccaaaactttaaatgcagGGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCA
ggctgac putative branch site (score: 3)
aaaactttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagtagtattcagtcttcattctttacggttaaatttcaaattgtctatcactctatctgtttggctgacttaagaatgtcccaaaactttaaatgcagGGGACTCGACTTGGAAGTTCAGATCCAAAAGGATGTTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - ttcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccaaaa