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...ctctaaagtttagtgtttttttttttaattatggaaaacataaatttatttatttgcaaatattttcagacactttataaattttctttgttggctgcagTCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGATGATCGGGCCATTTTGCTGGAATCAGGGCTTACAAGATCAGCATCAGCA
species | Glycine max |
transcript | GLYMA05G25780.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGT TCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGAEST: gi|22524348|gb|BU083159.1|BU083159
genomic: ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGTgtaagtttct ... ttggctgcagTCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGA
EST: ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGT TCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGAEST: gi|193477710|gb|FK439149.1|FK439149
genomic: ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGTgtaagtttct ... ttggctgcagTCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGA
EST: ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGT TCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGAEST: gi|193310780|gb|FK277560.1|FK277560
genomic: ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGTgtaagtttct ... ttggctgcagTCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGA
EST: ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGT TCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGAEST: gi|207692007|gb|GD673924.1|GD673924
genomic: ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGTgtaagtttct ... ttggctgcagTCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGA
EST: ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGT TCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGAEST: gi|193686673|gb|FK626080.1|FK626080
genomic: ATATATTCAGAGTACTTAGAGTACAAGAAACTCTCATCTCCTCCCAAAGTgtaagtttct ... ttggctgcagTCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGA
EST: TCTCCTCCCAAAGT TCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGA
genomic: TCTCCTCCCAAAGTgtaagtttct ... ttggctgcagTCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGA
ttatttatttgcaaatattttcagacactttataaattttctttgttggctgcagTCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGATGATCGGGCCATTTTGCTGGAATCAGGGCTTACAAGATCAGCATCAGCA
ttttctttgtt CT-rich tract
aaatattttcagacac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctaaagtttagtgtttttttttttaattatggaaaacataaatttatttatttgcaaatattttcagacactttataaattttctttgttggctgcagTCATTCAGATGCTAGTCTTGAAGAGTTGGGGAAGGATGCAATTAAGGAAGATGATCGGGCCATTTTGCTGGAATCAGGGCTTACAAGATCAGCATCAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA