1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...actttattaatattgaagcatgatgttatgtgcaaatttttgtttctttttcttccttgttgggtttttgtattttatgggtacatttcctttgttgcagCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTGTTGAGATTACTTGTGCAGAATAGGATTGCTGAATTCCATACTGAGTTG
species | Glycine max |
transcript | GLYMA05G25730.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTTGAAGCCTTATTATACAGATGCCTG CAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTEST: gi|192324155|gb|FK017886.1|FK017886
genomic: AGTTGAAGCCTTATTATACAGATGCCTGgtaacttttc ... tttgttgcagCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCT
EST: GATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTG CAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTEST: gi|298178308|gb|HO024043.1|HO024043
genomic: GATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGgtaacttttc ... tttgttgcagCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCT
EST: GCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTG CAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTEST: gi|58022693|gb|CX709434.1|CX709434
genomic: GCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGgtaacttttc ... tttgttgcagCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCT
EST: GCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCNTG CAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTEST: gi|58019686|gb|CX706428.1|CX706428
genomic: GCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGgtaacttttc ... tttgttgcagCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCT
EST: GCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTG CAATCGATTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTEST: gi|207833056|gb|GD801789.1|GD801789
genomic: GCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGgtaacttttc ... tttgttgcagCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCT
EST: GCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTG CAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTEST: gi|7234655|gb|AW569991.1|AW569991
genomic: GCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGgtaacttttc ... tttgttgcagCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCT
EST: GCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTG CAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTEST: gi|208241536|gb|GE036432.1|GE036432
genomic: GCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGgtaacttttc ... tttgttgcagCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCT
EST: TTGAAGCCTTATTATACAGATGCCTG CAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTEST: gi|33389688|gb|CA852895.1|CA852895
genomic: TTGAAGCCTTATTATACAGATGCCTGgtaacttttc ... tttgttgcagCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCT
EST: TTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTG CAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTEST: gi|208066004|gb|GD865215.1|GD865215
genomic: TTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGgtaacttttc ... tttgttgcagCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCT
EST: TTGAAGCCTTATTATACAGATGCCTG CAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTEST: gi|58014496|gb|CX701238.1|CX701238
genomic: TTGAAGCCTTATTATACAGATGCCTGgtaacttttc ... tttgttgcagCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCT
EST: GCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTG CAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTEST: gi|193637559|gb|FK584498.1|FK584498
genomic: GCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGgtaacttttc ... tttgttgcagCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCT
EST: GCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTG CAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTEST: gi|208189714|gb|GD990950.1|GD990950
genomic: GCTTTTGAAAGGGATTTCTTCCAGTTGAAGCCTTATTATACAGATGCCTGgtaacttttc ... tttgttgcagCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCT
EST: AGTTGAAGCCTTATTATACAGATGCCTG CAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCT
genomic: AGTTGAAGCCTTATTATACAGATGCCTGgtaacttttc ... tttgttgcagCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCT
ctttttcttccttgttgggtttttgtattttatgggtacatttcctttgttgcagCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTGTTGAGATTACTTGTGCAGAATAGGATTGCTGAATTCCATACTGAGTTG
tttcctttgtt CT-rich tract
tttttgtattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actttattaatattgaagcatgatgttatgtgcaaatttttgtttctttttcttccttgttgggtttttgtattttatgggtacatttcctttgttgcagCAATCGACTTCCACCATCTCCTCAGGAGTACCCAATTCTGGGTCTCAACCTGTTGAGATTACTTGTGCAGAATAGGATTGCTGAATTCCATACTGAGTTG
- - - - - - - - -gcatgat
- - - - - - - - - - - - - tatgtgc