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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtttgatgttgaattctattttaagttgtttgttgaaatgttttcagaatttcagtactctcatggtgtatttttccttacagTTATCTGCTAGTACTCAAAAGCTTGAAGAGTTGGCCCTTAAGCAATCTAGGTTATTAATCCCTGTGACACCATCCACACCAAGATCCCTG

Basic information

species Glycine max
transcript GLYMA05G25260.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G25260.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0055g00330.t01 (Vitis vinifera), 3'ss of exon 2
gtgtgtttgatgttgaatt-ctattttaagttgtttgttgaaatgttttcagaatttcagtactctcat--ggtgtatttttccttac------agTTATCTGCTAGTACTCAAAAGCTTGAAGAGTTGGCCCTTAAGCAATCTAGGTTATTAATCCCTGTGACACCATCCACACCAAGATCCCTG
||   |||| || |   ||  |||| |   |  ||| ||||  ||| ||   ||| |    || || ||  |||  | ||||  || |      ||||||||| | | ||||||| ||||||||||||||| ||||| |||||||||  |||||| ||  ||||||||||||  || | | |||||
gtaactttgctgctctgttattattctttttatttttttgacgtgtatttgaaatattctcacccttatatggttcaattttttttcctattgaagTTATCTGTTGGAACTCAAAGGCTTGAAGAGTTGGCTCTTAAACAATCTAGGCAATTAATTCCCATGACACCATCCATGCCTAAAACCCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttgaaatgttttcagaatttcagtactctcatggtgtatttttccttacagTTATCTGCTAGTACTCAAAAGCTTGAAGAGTTGGCCCTTAAGCAATCTAGGTTATTAATCCCTGTGACACCATCCACACCAAGATCCCTG
                                        tatttttcctt  CT-rich tract
       aaatgtttt  TA-rich tract