1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttgctttttgctgttgtgcatgtattctaattactaatgtcatacttgtattgtcatcttgttgcttgtgtaccgggccactgttgcctttcaataaccactacttttctctatttcttcatattaattcttactttatatcttttttattctgcagTACTATCATCTCTTAATGGTTTGAAAGTTGGGGTAGATGCAATTAAGCAAG
species | Glycine max |
transcript | GLYMA05G24530.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTATTTTCCTATGGTGATGGCTAACGGGGTTGTTACACCAGCAATGTCAG TACTATCATCTCTTAATGGTTTGAAAGTTGGGGTAGATGCAATTAAAGCAAEST: gi|193564929|gb|FK520114.1|FK520114
genomic: GTA-TTTCC-ATGGTGATGGCTAACGGGGTTGTTACACCAGCAATGTCAGgttgcttttt ... tattctgcagTACTATCATCTCTTAATGGTTTGAAAGTTGGGGTAGATGCAATT-AAGCAA
EST: GGTATTTTCCATGGTGATGGCTAACGGGGTTGTTACACCAGCAATGTCAG TACTATCATCTCTTAATGGTTTGAAAGTTGGGGTAGATGCAATTAAGCAAG
genomic: GGTA-TTTCCATGGTGATGGCTAACGGGGTTGTTACACCAGCAATGTCAGgttgcttttt ... tattctgcagTACTATCATCTCTTAATGGTTTGAAAGTTGGGGTAGATGCAATTAAGCAAG
acttttctctatttcttcatattaattcttactttatatcttttttattctgcagTACTATCATCTCTTAATGGTTTGAAAGTTGGGGTAGATGCAATTAAGCAAG
ttcttac putative branch site (score: 2)
ttcttactttatatct CT-rich tract
tatttcttcatattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgctttttgctgttgtgcatgtattctaattactaatgtcatacttgtattgtcatcttgttgcttgtgtaccgggccactgttgcctttcaataaccactacttttctctatttcttcatattaattcttactttatatcttttttattctgcagTACTATCATCTCTTAATGGTTTGAAAGTTGGGGTAGATGCAATTAAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG