1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagttttatttgccaaattctttcagttatagctttctccatgagttactatgcaaagttttctgcttatcaagcaccatagtattctgatttctgatcaatctgtgttatctgattccagGTGGGATTCAATATGAGGAAGGTAACAAAAGGAAATGTTACAATAAAGTTATGGGATCTTGGAGGGCAACCTAGATTCCGCAGCATGTGGGAACGTTATT
species | Glycine max |
transcript | GLYMA05G22480.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGGACATGATTCCTACA GTGGGATTCAATATGA-GAAGGTAACAAAA-GAAATG-TAC-ATAAAGTTAEST: gi|208277230|gb|GE077905.1|GE077905
genomic: GAGGACATGATTCCTACAgtaagtttta ... ctgattccagGTGGGATTCAATATGAGGAAGGTAACAAAAGGAAATGTTACAATAAAGTTA
EST: ACTGGCGGGTATAGCGAGGACATGATTCCTACA GTGGGATTCAATATGAGGAAGGTAACAAAAGGAAATGTTACAATAAAGTTAEST: gi|208227944|gb|GE027844.1|GE027844
genomic: ACTGGCGGGTATAGCGAGGACATGATTCCTACAgtaagtttta ... ctgattccagGTGGGATTCAATATGAGGAAGGTAACAAAAGGAAATGTTACAATAAAGTTA
EST: TAGCGAGGACATGATCCCTACA GT-GGATTCAATATGAGGAAGGTAACAAAAGGAAATGTTACAATAAAGTTA
genomic: TAGCGAGGACATGATTCCTACAgtaagtttta ... ctgattccagGTGGGATTCAATATGAGGAAGGTAACAAAAGGAAATGTTACAATAAAGTTA
ttatcaagcaccatagtattctgatttctgatcaatctgtgttatctgattccagGTGGGATTCAATATGAGGAAGGTAACAAAAGGAAATGTTACAATAAAGTTATGGGATCTTGGAGGGCAACCTAGATTCCGCAGCATGTGGGAACGTTATT
atagtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttatttgccaaattctttcagttatagctttctccatgagttactatgcaaagttttctgcttatcaagcaccatagtattctgatttctgatcaatctgtgttatctgattccagGTGGGATTCAATATGAGGAAGGTAACAAAAGGAAATGTTACAATAAAGTTATGGGATCTTGGAGGGCAACCTAGATTCCGCAGCATGTGGGAACGTTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG