1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaataataattttcttacattcaccttactctgttttttttttttcgtagaggaaactctcacacctgttttggttttttaattgttaatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGCTATCCATTCTCATGTTGTGAGGGTTCGATCCCGCACTGATAGGAGGAA
species | Glycine max |
transcript | GLYMA05G21370.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGAAGATGCAGNACTGGTGTT-CCTGTEST: gi|6070885|gb|AW100272.1|AW100272
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTG-TGTTTCCTGT
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACCCCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTEST: gi|192326591|gb|FK018838.1|FK018838
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGC-TTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGT
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGEST: gi|298198055|gb|HO039594.1|HO039594
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGEST: gi|26058129|gb|CA801043.1|CA801043
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGEST: gi|9205491|gb|BE331715.1|BE331715
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGEST: gi|31465608|gb|CD407636.1|CD407636
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGEST: gi|10238902|gb|BE807798.1|BE807798
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGEST: gi|151411510|gb|EV281321.1|EV281321
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGEST: gi|298192759|gb|HO033193.1|HO033193
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGAAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGEST: gi|31466786|gb|CD408814.1|CD408814
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGEST: gi|298183541|gb|HO028754.1|HO028754
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGEST: gi|298182602|gb|HO031337.1|HO031337
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGEST: gi|298162975|gb|HO011708.1|HO011708
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGTAGATGCAGTACTGTGTTTCCTGTGEST: gi|17023090|gb|BM094124.1|BM094124
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGEST: gi|192296480|gb|FG992316.1|FG992316
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGEST: gi|298197741|gb|HO045220.1|HO045220
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGEST: gi|4405733|gb|AI507882.1|AI507882
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGEST: gi|298163646|gb|HO012379.1|HO012379
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGEST: gi|31474104|gb|CD416132.1|CD416132
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGEST: gi|21601683|gb|BQ612014.1|BQ612014
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
EST: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAAC AATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
genomic: TGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACgtaataataa ... taatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTG
ttttcgtagaggaaactctcacacctgttttggttttttaattgttaatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGCTATCCATTCTCATGTTGTGAGGGTTCGATCCCGCACTGATAGGAGGAA
tgttaat putative branch site (score: 3)
ttttggttttttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataataattttcttacattcaccttactctgttttttttttttcgtagaggaaactctcacacctgttttggttttttaattgttaatttgtagAATACACGCTTCCGAAACTATATGTGAAGATGCAGTACTGTGTTTCCTGTGCTATCCATTCTCATGTTGTGAGGGTTCGATCCCGCACTGATAGGAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA