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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaattgaactttatttgcttcatttaggtcacaaaccaacatgtggcttgatattatttgccgtatattttgacagATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGTCTTGTATGGACAACGGGATGTCTGATTTCCATTTGAGAAATTGTTTAGA

Basic information

species Glycine max
transcript GLYMA05G20940.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208210003|gb|GE005576.1|GE005576
EST:     ACAAGCCTTTCAGTAGGACTGAAATTTTCAG                         ATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
genomic: ACAAGCCTTTCAG-AGGACTGAAATTTTCAGgttaattgaa ... attttgacagATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
EST: gi|7028495|gb|AW458278.1|AW458278
EST:     AGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAG                         ATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
genomic: AGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
EST: gi|58017620|gb|CX704362.1|CX704362
EST:     AGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAG                         ATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
genomic: AGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
EST: gi|208178246|gb|GD976533.1|GD976533
EST:     AGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAG                         ATGGAGCAATCTGAGGATTTGATAGGAAAGTTAGAAGAAAGTTGCTT
genomic: AGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagATGGAGCAATCTGAGGATTTGAT-GGAA-GTT-GAAGAAAGTTGCTT
EST: gi|33389247|gb|CA852454.1|CA852454
EST:     GAGAGCACCACCAGNAAATCACAAGCCTTTCAGAGGACTGAAATTTTCGG                         ATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
genomic: GAGAGCACCACCAG-AAATCACAAGCCTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
EST: gi|58014302|gb|CX701044.1|CX701044
EST:     AGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAG                         ATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
genomic: AGAGAGCACCACCAGAAATCACAAGCCTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
EST: gi|207708887|gb|GD691549.1|GD691549
EST:     ACAAGCCTTTCAGAGGACTGAAATTTTCAG                         ATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT
genomic: ACAAGCCTTTCAGAGGACTGAAATTTTCAGgttaattgaa ... attttgacagATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttaggtcacaaaccaacatgtggcttgatattatttgccgtatattttgacagATGGAGCAATCTGAGGATTTGATGGAAGTTGAAGAAAGTTGCTTTTGAGGTCTTGTATGGACAACGGGATGTCTGATTTCCATTTGAGAAATTGTTTAGA
                        gcttgat  putative branch site (score: 5)
                          ttgatattattt  TA-rich tract