1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agttaaagctttacattggccatattatgctgtcacatcccggttaatttgatgttttagacttattttgatgtatgcattaatcttcttccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG
species | Glycine max |
transcript | GLYMA05G14330.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|23726961|gb|BU761493.1|BU761493
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|192295112|gb|FG986831.1|FG986831
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|192295381|gb|FG986995.1|FG986995
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|192320029|gb|FK013357.1|FK013357
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|192324604|gb|FK018730.1|FK018730
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|151400518|gb|EV270332.1|EV270332
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|15200376|gb|BI424317.1|BI424317
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|298165082|gb|HO011131.1|HO011131
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|213590582|gb|DB973327.1|DB973327
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|14205743|gb|BG839421.1|BG839421
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATKCACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|151409026|gb|EV278834.1|EV278834
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGGTTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|208112458|gb|GD910181.1|GD910181
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|254338069|gb|GR849701.1|GR849701
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|151410622|gb|EV280437.1|EV280437
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGGTGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|16348120|gb|BI973715.1|BI973715
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|192303719|gb|FG994557.1|FG994557
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|151411428|gb|EV281239.1|EV281239
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|298162963|gb|HO011696.1|HO011696
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|298174725|gb|HO014756.1|HO014756
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCCGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|298195782|gb|HO044173.1|HO044173
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGEST: gi|193423628|gb|FK387293.1|FK387293
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
EST: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATG GCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
genomic: TTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtactttgac ... ccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAG
aatttgatgttttagacttattttgatgtatgcattaatcttcttccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG
cattaat putative branch site (score: 3)
tcttcttccaatttt CT-rich tract
ttttagacttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttaaagctttacattggccatattatgctgtcacatcccggttaatttgatgttttagacttattttgatgtatgcattaatcttcttccaattttagGCTGTAGCAGGATTAGCAGCTGATGGCAGACAAATTGTTGCCAGGGCTAAGTCTGAAGCTACTAACTATGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC