1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttcttatttaatttgtttacttgttctacacctgaacgttataagtttgtacttcgaatttgttccctacgcaagtttgtaacctgttgttatgattcagGCTCGATTCTTCTTTCAGCAACTCATATCCGGGGTCAGCTATTGCCATGCTATG
species | Glycine max |
transcript | GLYMA05G09460.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGAGCTCTTTGAGAAAATCTGCAATGCTGGACGTTTTACTGAGGATGAG GCTCGATTCTTCTTTCAGCAACTCATATCCGGGGGCAGCTATTGCCATGCTEST: gi|7685757|gb|AW756405.1|AW756405
genomic: GAGAGCTCTTTGAGAAAATCTGCAATGCTGGACGTTTTACTGAGGATGAGgttcttattt ... tatgattcagGCTCGATTCTTCTTTCAGCAACTCATATCCGGGGTCAGCTATTGCCATGCT
EST: GAGAGCTCTTTGAGAAAATCTGCAATGCTGGACGTTTTACTGAGGATGAG GCTCGATTCTTCTTTCAGCAACTCATATCCGGGGTCAGCTATTGCCATGCTEST: gi|120495545|gb|EH223712.1|EH223712
genomic: GAGAGCTCTTTGAGAAAATCTGCAATGCTGGACGTTTTACTGAGGATGAGgttcttattt ... tatgattcagGCTCGATTCTTCTTTCAGCAACTCATATCCGGGGTCAGCTATTGCCATGCT
EST: GAGAGCTCTTTGAGAAAATCTGCAATGCTGGACGTTTTACTGAGGATGAG GCTCGATTCTTCTTTCAGCAACTCATATCCGGGGTCAGCTATTGCCATGCT
genomic: GAGAGCTCTTTGAGAAAATCTGCAATGCTGGACGTTTTACTGAGGATGAGgttcttattt ... tatgattcagGCTCGATTCTTCTTTCAGCAACTCATATCCGGGGTCAGCTATTGCCATGCT
tttgtacttcgaatttgttccctacgcaagtttgtaacctgttgttatgattcagGCTCGATTCTTCTTTCAGCAACTCATATCCGGGGTCAGCTATTGCCATGCTATG
ttgtaac putative branch site (score: 2)
aatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttatttaatttgtttacttgttctacacctgaacgttataagtttgtacttcgaatttgttccctacgcaagtttgtaacctgttgttatgattcagGCTCGATTCTTCTTTCAGCAACTCATATCCGGGGTCAGCTATTGCCATGCTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT