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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcagtgtcctcatcaaccaggaggtgctcatatgttgttttttttttgttctccatttcagttttccattatgatgatctatttttcttcttgttacagGTATTGTGTTGGATTCTGGGGATGGTGTCAGCCACACAGTCCCTATCTATGAGGGTTATGCCCTCCCACATGCAATCCTTCGTCTTGATTTGGCTGGCCG

Basic information

species Glycine max
transcript GLYMA05G09290.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G09290.3 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0019g01240.t01 (Vitis vinifera), 3'ss of exon 2
--------atcagtgtcctcatcaaccaggaggtgctcatatgttgttttttttttgttctccatttcagttttccattatgatgatctatttttcttcttgttacagGTATTGTGTTGGATTCTGGGGATGGTGTCAGCCACACAGTCCCTATCTATGAGGGTTATGCCCTCCCACATGCAATCCTTCGTCTTGATTTGGCTGGCCG
             |||  || ||  |||       |||   |     |  ||| | ||  |  ||  ||| | | |||   | |  | ||||||   |       ||||||||||| |||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||
gacaaggagatgatgta-tcgtcctccaacctactctcccctccccctgctttatagtgata-atgacagatgttcatgtgggtactttattttctgt------gcagGTATTGTGCTGGACTCTGGTGATGGTGTCAGCCATACAGTCCCAATCTATGAGGGTTATGCCCTCCCACATGCCATCCTTCGTCTTGATCTTGCTGGCCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7478494|gb|AW666288.1|AW666288
EST:     TGTTGCTATTCAGGCTGTTCTTTCACTGTATGCCAGTGGCCGTACGACTG                         GTATTGTGTTGGATTCTGGGGATGGTGTCAGCCACACAGTGCCTATCTATG
genomic: TGTTGCTATTCAGGCTGTTCTTTCACTGTATGCCAGTGGTCGTACAACTGgtaagatatt ... cttgttacagGTATTGTGTTGGATTCTGGGGATGGTGTCAGCCACACAGTCCCTATCTATG
EST: gi|192299157|gb|FG990443.1|FG990443
EST:     TGTTGCTATTCAGGCTGTTCTTTCACTGTATGCCAGTGGTCGTACAACTG                         GTATTGTGTTGGATTCTGGGGATGGTGTCAGCCACACAGTCCCTATCTATG
genomic: TGTTGCTATTCAGGCTGTTCTTTCACTGTATGCCAGTGGTCGTACAACTGgtaagatatt ... cttgttacagGTATTGTGTTGGATTCTGGGGATGGTGTCAGCCACACAGTCCCTATCTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttctccatttcagttttccattatgatgatctatttttcttcttgttacagGTATTGTGTTGGATTCTGGGGATGGTGTCAGCCACACAGTCCCTATCTATGAGGGTTATGCCCTCCCACATGCAATCCTTCGTCTTGATTTGGCTGGCCG
                                 tctatttttcttcttg  CT-rich tract
                                atctattttt  TA-rich tract