1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atcagtgtcctcatcaaccaggaggtgctcatatgttgttttttttttgttctccatttcagttttccattatgatgatctatttttcttcttgttacagGTATTGTGTTGGATTCTGGGGATGGTGTCAGCCACACAGTCCCTATCTATGAGGGTTATGCCCTCCCACATGCAATCCTTCGTCTTGATTTGGCTGGCCG
species | Glycine max |
transcript | GLYMA05G09290.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTTGCTATTCAGGCTGTTCTTTCACTGTATGCCAGTGGCCGTACGACTG GTATTGTGTTGGATTCTGGGGATGGTGTCAGCCACACAGTGCCTATCTATGEST: gi|192299157|gb|FG990443.1|FG990443
genomic: TGTTGCTATTCAGGCTGTTCTTTCACTGTATGCCAGTGGTCGTACAACTGgtaagatatt ... cttgttacagGTATTGTGTTGGATTCTGGGGATGGTGTCAGCCACACAGTCCCTATCTATG
EST: TGTTGCTATTCAGGCTGTTCTTTCACTGTATGCCAGTGGTCGTACAACTG GTATTGTGTTGGATTCTGGGGATGGTGTCAGCCACACAGTCCCTATCTATG
genomic: TGTTGCTATTCAGGCTGTTCTTTCACTGTATGCCAGTGGTCGTACAACTGgtaagatatt ... cttgttacagGTATTGTGTTGGATTCTGGGGATGGTGTCAGCCACACAGTCCCTATCTATG
tttgttctccatttcagttttccattatgatgatctatttttcttcttgttacagGTATTGTGTTGGATTCTGGGGATGGTGTCAGCCACACAGTCCCTATCTATGAGGGTTATGCCCTCCCACATGCAATCCTTCGTCTTGATTTGGCTGGCCG
tctatttttcttcttg CT-rich tract
atctattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcagtgtcctcatcaaccaggaggtgctcatatgttgttttttttttgttctccatttcagttttccattatgatgatctatttttcttcttgttacagGTATTGTGTTGGATTCTGGGGATGGTGTCAGCCACACAGTCCCTATCTATGAGGGTTATGCCCTCCCACATGCAATCCTTCGTCTTGATTTGGCTGGCCG
- - -tgtcctc
- - - - - - -tcaacca
- - - - - - - - - - ggaggtg
- - - - - - - - - - - - - - - - -tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgat