Sequence
atgc intronic sequence ATGC exonic sequencegtaagagtccttttgtatcgttgaacttcttaacatattgaaactgaaattctcatgtgctatgctattaattacttctttattataattagGCACTCAGGTTCTATGGAAGTGATGGTGTAACAGTCACAGGCATAACAATTCAGAATAGTCAACAAACCCATCTCAAGTTTGACTCTTGCACAAATGTTC
Basic information
| species | Glycine max |
| transcript | GLYMA05G08730.1 |
| intron # | 3 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G08730.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0066g01060.t01 (Vitis vinifera), 3'ss of exon 4
-----------gtaagagtccttttgtatcgttgaacttcttaacatattgaaactgaaattct-catgtgctatgctattaattacttctttattataattagGCACTCAGGTTCTATGGAAGTGATGGTGTAACAGTCACAGGCATAACAATTCAGAATAGTCAACAAACCCATCTCAAGTTTGACTCTTGCACAAATGTTC
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gtaagtgccttttcataaacttttcccatccacacaattccaca-accttggaacgaaatctcaacatcaaaaaatttatttgtggtgttgttctgatgtgcagGCTCTCAGGTTCTATGGGAGTTCTGTTGTGACAGTCACTGGCATCACAATTCAAAACAGTCCTCAGACCCACCTCAAGTTTGATGATTGCACCGGCGTCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21677302|gb|BQ629653.1|BQ629653EST: CTAGCACAAAACCAACA GCACTCAGGTTCTATGGAAGTGATGGTGTAACAGTCACAGGCATAACAATT
genomic: CTAGCACAAAACCAACAgtaagagtcc ... ttataattagGCACTCAGGTTCTATGGAAGTGATGGTGTAACAGTCACAGGCATAACAATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaaactgaaattctcatgtgctatgctattaattacttctttattataattagGCACTCAGGTTCTATGGAAGTGATGGTGTAACAGTCACAGGCATAACAATTCAGAATAGTCAACAAACCCATCTCAAGTTTGACTCTTGCACAAATGTTC
tattaat putative branch site (score: 2)
cttctttatt putative PPT
tatgctattaattact TA-rich tract
