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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtatattttgatgctggtcttgatgcataattttaactgctagtattaacttgttgagatcaaatgataatttggtgcttcatagGAAGGATTTGCCTTCTCACACTGCACAACCTGCAAAGCCCAATTTCATCTTAGAGTTGAATCGTTTGAGGACAACTCTTGGCGTAAAATAAAGTTCAGAC

Basic information

species Glycine max
transcript GLYMA05G08220.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G08220.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv11s0016g04730.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------------------------------gtgtatatttt--gatgctggtcttgatgcataattttaactgctagtattaacttgttgagatcaaatgataatttggtgcttcatagGAAGGATTTGCCTTCTCACACTGCACAACCTGCAAAGCCCAATTTCATCTTAGAGTTGAATCGTTTGAGGACAACTCTTGGCGTAAAATAAAGTTCAGAC
                                                     ||  | |||||   | | || | ||  |  |  || | |     | |  |||  ||      ||  || | |  |||| | ||| | ||||||||||||| |||||||| |||||||| ||||| || || |  ||||||  ||||| ||  || || ||||||||||||||||| |||||||||||||
gcaagtattctttcttggggttctactgttctagtagcaattgatttcgaattgtaaaaatttttgaaggttgattttcttata-gatctaatgaagttgctttattttccc---attcaacggttctttg-tcctttacagGAAGGATTTGCTTTCTCACATTGCACAACTTGCAAGGCGCAGTACCATCTTCAAGTTGCATTATTCGAAGACAACTCTTGGCGTAAGATAAAGTTCAGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21600809|gb|BQ611140.1|BQ611140
EST:     CCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAG                         GAAGGATTTGCCTTCTCACACTGCACAACCTGCAAAGCCCAATTTCATCTT
genomic: CCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAGgtgtatattt ... tgcttcatagGAAGGATTTGCCTTCTCACACTGCACAACCTGCAAAGCCCAATTTCATCTT
EST: gi|151412097|gb|EV281909.1|EV281909
EST:     CCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAG                         GAAGGATTTGCCTTCTCACACTGCACAACCTGCAAAGCCCAATTTCATCTT
genomic: CCCAACAGTTTGTCCATCGTTCATGTCTTGATCATTGGCGCTCAGTAAAGgtgtatattt ... tgcttcatagGAAGGATTTGCCTTCTCACACTGCACAACCTGCAAAGCCCAATTTCATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttaactgctagtattaacttgttgagatcaaatgataatttggtgcttcatagGAAGGATTTGCCTTCTCACACTGCACAACCTGCAAAGCCCAATTTCATCTTAGAGTTGAATCGTTTGAGGACAACTCTTGGCGTAAAATAAAGTTCAGAC
             tattaac  putative branch site (score: 1)
                            atcaaatgataattt  TA-rich tract